The Ontology of the Amphioxus Anatomy and Life Cycle (AMPHX)

Autor: Stephanie Bertrand, João E. Carvalho, Delphine Dauga, Nicolas Matentzoglu, Vladimir Daric, Jr-Kai Yu, Michael Schubert, Hector Escrivá

Publikováno v: Frontiers in Cell and Developmental Biology, Vol 9 (2021)

An ontology is a computable representation of the different parts of an organism and its different developmental stages as well as the relationships between them. The ontology of model organisms is therefore a fundamental tool for a multitude of bioi

Externí odkaz: https://doaj.org/article/f11c9893110648ccbae098a2f6a1bbff

The ontology of the anatomy and development of the solitary ascidian Ciona: the swimming larva and its metamorphosis

Autor: Kohji Hotta, Delphine Dauga, Lucia Manni

Publikováno v: Scientific Reports, Vol 10, Iss 1, Pp 1-16 (2020)
Scientific Reports

Ciona robusta (Ciona intestinalis type A), a model organism for biological studies, belongs to ascidians, the main class of tunicates, which are the closest relatives of vertebrates. In Ciona, a project on the ontology of both development and anatomy

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e8444d520ec9e716503b23265542c118
http://link.springer.com/article/10.1038/s41598-020-73544-9

ANISEED 2019: 4D exploration of genetic data for an extended range of tunicates

Autor: Hiroki Nishida, Magali Naville, Paul Simion, Christelle Dantec, Wendy Reeves, Bradley Davidson, Rémi Dumollard, Justine Dardaillon, Takeshi A. Onuma, Kai Wang, Kazuhiro R. Nitta, Jean-Nicolas Volff, Joseph F. Ryan, Patrick Lemaire, Emmanuel Faure, Lydia Besnardeau, Michael Veeman, Marie Fagotto, Alexandra Louis, Hugues Roest Crollius, Delphine Dauga, Marion Gueroult-Bellone, Melissa B. DeBiasse, Shigeki Fujiwara, Emmanuel J. P. Douzery

Publikováno v: Nucleic Acids Research
Nucleic Acids Research, Oxford University Press, 2019, ⟨10.1093/nar/gkz955⟩
Nucleic Acids Research, 2019, ⟨10.1093/nar/gkz955⟩

ANISEED (https://www.aniseed.cnrs.fr) is the main model organism database for the worldwide community of scientists working on tunicates, the vertebrate sister-group. Information provided for each species includes functionally-annotated gene and tran

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f62681f8ff3d5130d61668d5f199a4f2
https://hal.archives-ouvertes.fr/hal-03457636

Guidelines for the nomenclature of genetic elements in tunicate genomes

Autor: Yasunori Sasakura, Patrick Lemaire, Christelle Dantec, Jean Nicolas Volff, Delphine Dauga, Lionel Christiaen, Toshinori Endo, Yutaka Satou, Magali Naville, Domitille Chalopin, Hiroki Nishida, Ayelet Voskoboynik, Alberto Stolfi, Billie J. Swalla

Publikováno v: genesis. 53:1-14

Tunicates are invertebrate members of the chordate phylum, and are considered to be the sister group of vertebrates. Tunicates are composed of ascidians, thaliaceans, and appendicularians. With the advent of inexpensive high-throughput sequencing, th

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::16b1c07199bf38b55812c81886a4be87
https://doi.org/10.1002/dvg.22822

Ontology for the Asexual Development and Anatomy of the Colonial Chordate Botryllus schlosseri

Autor: Delphine Dauga, Fabio Gasparini, Ayelet Voskoboynik, Stefano Tiozzo, Lucia Manni, Kohji Hotta, Katherine J. Ishizuka, Lorenzo Ricci

Publikováno v: PLoS ONE
PLoS ONE, Vol 9, Iss 5, p e96434 (2014)
PLoS ONE, 2014, 9 (5), pp.e96434. ⟨10.1371/journal.pone.0096434⟩
PLoS ONE, Public Library of Science, 2014, 9 (5), pp.e96434. ⟨10.1371/journal.pone.0096434⟩

International audience; Ontologies provide an important resource to integrate information. For developmental biology and comparative anatomy studies, ontologies of a species are used to formalize and annotate data that are related to anatomical struc

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f96b57a12f03c9154d2f64c0ed330806
http://europepmc.org/articles/PMC4006837