Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A

Autor: Szurek Boris, Meyer Damien F, Ishihara Hiromichi, Patil Prabhu B, Pandey Alok, Jha Gopaljee, Aparna Gudlur, Trapnell Cole, Shumway Martin, Radune Diana, Puiu Daniela, Madupu Ramana, Kelley David, Delcher Arthur L, Ochiai Hirokazu, Furutani Ayako, Tsuge Seiji, Rabinowicz Pablo D, Phillippy Adam M, Schatz Michael C, Sommer Daniel D, Salzberg Steven L, Verdier Valerie, Koebnik Ralf, Dow J Maxwell, Ryan Robert P, Hirata Hisae, Tsuyumu Shinji, Won Lee Sang, Ronald Pamela C, Sonti Ramesh V, Van Sluys Marie-Anne, Leach Jan E, White Frank F, Bogdanove Adam J

Publikováno v: BMC Genomics, Vol 9, Iss 1, p 204 (2008)

Abstract Background Xanthomonas oryzae pv. oryzae causes bacterial blight of rice (Oryza sativa L.), a major disease that constrains production of this staple crop in many parts of the world. We report here on the complete genome sequence of strain P

Externí odkaz: https://doaj.org/article/b9d31e680de54b928d31accc061b08e2

Minimus: a fast, lightweight genome assembler

Autor: Salzberg Steven L, Delcher Arthur L, Sommer Daniel D, Pop Mihai

Publikováno v: BMC Bioinformatics, Vol 8, Iss 1, p 64 (2007)

Abstract Background Genome assemblers have grown very large and complex in response to the need for algorithms to handle the challenges of large whole-genome sequencing projects. Many of the most common uses of assemblers, however, are best served by

Externí odkaz: https://doaj.org/article/413141a3a2684f229fb80dd0283dc7d3

Logarithmic-Time Updates and Queries in Probabilistic Networks

Autor: Delcher, Arthur L., Grove, Adam J., Kasif, Simon, Pearl, Judea

In this paper we propose a dynamic data structure that supports efficient algorithms for updating and querying singly connected Bayesian networks (causal trees and polytrees). In the conventional algorithms, new evidence in absorbed in time O(1) and

Externí odkaz: http://arxiv.org/abs/1408.1479

The Genome Sequence of Trypanosoma cruzi, Etiologic Agent of Chagas Disease

Autor: El-Sayed, Najib M., Myler, Peter J., Bartholomeu, Daniella C., Nilsson, Daniel, Aggarwal, Gautam, Tran, Anh-Nhi, Ghedin, Elodie, Worthey, Elizabeth A., Delcher, Arthur L., Blandin, Gaëlle, Westenberger, Scott J., Caler, Elisabet, Cerqueira, Gustavo C., Anupama, Atashi, Arner, Erik, Åslund, Lena, Attipoe, Philip, Bontempi, Esteban, Bringaud, Frédéric, Burton, Peter, Cadag, Eithon, Campbell, David A., Carrington, Mark, Crabtree, Jonathan, Darban, Hamid, da Silveira, Jose Franco, de Jong, Pieter, Edwards, Kimberly, Englund, Paul T., Fazelina, Gholam, Feldblyum, Tamara, Ferella, Marcela, Frasch, Alberto Carlos, Gull, Keith, Horn, David, Hou, Lihua, Huang, Yiting, Kindlund, Ellen, Klingbeil, Michele, Kluge, Sindy, Koo, Hean, Lacerda, Daniela, Levin, Mariano J., Lorenzi, Hernan, Louie, Tin, Machado, Carlos Renato, McCulloch, Richard, McKenna, Alan, Mizuno, Yumi, Mottram, Jeremy C., Nelson, Siri, Ochaya, Stephen, Osoegawa, Kazutoyo, Pai, Grace, Parsons, Marilyn, Pentony, Martin, Pettersson, Ulf, Pop, Mihai, Ramirez, Jose Luis, Rinta, Joel, Robertson, Laura, Salzberg, Steven L., Sanchez, Daniel O., Seyler, Amber, Sharma, Reuben, Shetty, Jyoti, Simpson, Anjana J., Sisk, Ellen, Tammi, Martti T., Tarleton, Rick, Teixeira, Santuza, Van Aken, Susan, Vogt, Christy, Ward, Pauline N., Wickstead, Bill, Wortman, Jennifer, White, Owen, Fraser, Claire M., Stuart, Kenneth D., Andersson, Björn

Publikováno v: Science, 2005 Jul . 309(5733), 409-415.

Externí odkaz: https://www.jstor.org/stable/3842224

The Dog Genome: Survey Sequencing and Comparative Analysis

Autor: Kirkness, Ewen F., Bafna, Vineet, Halpern, Aaron L., Levy, Samuel, Remington, Karin, Rusch, Douglas B., Delcher, Arthur L., Pop, Mihai, Wang, Wei, Fraser, Claire M., Venter, J. Craig

Publikováno v: Science, 2003 Sep . 301(5641), 1898-1903.

Externí odkaz: https://www.jstor.org/stable/3835185