Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34

Autor: Anderson, IJ, DasSarma, P, Lucas, S, Copeland, A, Lapidus, A, Del Rio, TG, Tice, H, Dalin, E, Bruce, DC, Goodwin, L, Pitluck, S, Sims, D, Brettin, TS, Detter, JC, Han, CS, Larimer, F, Hauser, L, Land, M, Ivanova, N, Richardson, P, Cavicchioli, R, DasSarma, S, Woese, CR, Kyrpides, NC

Publikováno v: Anderson, IJ; DasSarma, P; Lucas, S; Copeland, A; Lapidus, A; Del Rio, TG; et al.(2016). Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34. Standards in Genomic Sciences, 11(1). doi: 10.1186/s40793-016-0194-2. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/6m53g9d2

© 2016 The Author(s). Halorubrum lacusprofundi is an extreme halophile within the archaeal phylum Euryarchaeota. The type strain ACAM 34 was isolated from Deep Lake, Antarctica. H. lacusprofundi is of phylogenetic interest because it is distantly re

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http://www.escholarship.org/uc/item/6m53g9d2

Genome sequence of Frateuria aurantia type strain (Kondô 67T), a xanthomonade isolated from Lilium auratium Lindl

Autor: Anderson, I, Teshima, H, Nolan, M, Lapidus, A, Tice, H, Del Rio, TG, Cheng, JF, Han, C, Tapia, R, Goodwin, LA, Pitluck, S, Liolios, K, Mavromatis, K, Pagani, I, Ivanova, N, Mikhailova, N, Pati, A, Chen, A, Palaniappan, K, Land, M, Rohde, M, Lang, E, Detter, JC, Göker, M, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC, Klenk, HP

Publikováno v: Anderson, I; Teshima, H; Nolan, M; Lapidus, A; Tice, H; Del Rio, TG; et al.(2013). Genome sequence of Frateuria aurantia type strain (Kondô 67T), a xanthomonade isolated from Lilium auratium Lindl. Standards in Genomic Sciences, 9(1), 83-92. doi: 10.4056/sigs.4338002. UC Davis: Retrieved from: http://www.escholarship.org/uc/item/0rj32607

Frateuria aurantia (ex Kondô and Ameyama 1958) Swings et al. 1980 is a member of the bispecific genus Frateuria in the family Xanthomonadaceae, which is already heavily tar-geted for non-type strain genome sequencing. Strain Kondô 67Twas initially

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http://www.escholarship.org/uc/item/0rj32607

Complete genome sequence of Meiothermus ruber type strain (21 T)

Autor: Tindall, BJ, Sikorski, J, Lucas, S, Goltsman, E, Copeland, A, del Rio, TG, Nolan, M, Tice, H, Cheng, JF, Han, C, Pitluck, S, Liolios, K, Ivanova, N, Mavromatis, K, Ovchinnikova, G, Pati, A, Fähnrich, R, Goodwin, L, Chen, A, Palaniappan, K, Land, M, Hauser, L, Chang, YJ, Jeffries, CD, Rohde, M, Göker, M, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC, Klenk, HP, Lapidus, A

Publikováno v: Tindall, BJ; Sikorski, J; Lucas, S; Goltsman, E; Copeland, A; del Rio, TG; et al.(2010). Complete genome sequence of Meiothermus ruber type strain (21 T). Standards in Genomic Sciences, 3(1), 26-36. doi: 10.4056/sigs.1032748. UC Davis: Retrieved from: http://www.escholarship.org/uc/item/9tt3438x

Meiothermus ruber (Loginova et al. 1984) Nobre et al. 1996 is the type species of the genus Meiothermus. This thermophilic genus is of special interest, as its members share relatively low degrees of 16S rRNA gene sequence similarity and constitute a

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Complete genome sequence of Halogeometricum borinquense type strain (PR3T)

Autor: Malfatti, S, Tindall, BJ, Schneider, S, Fähnrich, R, Lapidus, A, LaButtii, K, Copeland, A, Del Rio, TG, Nolan, M, Chen, F, Lu-cas, S, Tice, H, Cheng, JF, Bruce, D, Goodwin, L, Pitluck, S, An-derson, I, Pati, A, Ivanova, N, Mavromatis, K, Chen, A, Pa-laniappan, K, D'haeseleer, P, Göker, M, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC, Klenk, HP, Chain, P

Publikováno v: Malfatti, S; Tindall, BJ; Schneider, S; Fähnrich, R; Lapidus, A; LaButtii, K; et al.(2009). Complete genome sequence of Halogeometricum borinquense type strain (PR3T). Standards in Genomic Sciences, 1(2), 150-158. doi: 10.4056/sigs.23264. UC Davis: Retrieved from: http://www.escholarship.org/uc/item/1wc160x7

© 2009, BioMed Central Ltd. Halogeometricum borinquense Montalvo-Rodríguez et al. 1998 is the type species of the ge-nus, and is of phylogenetic interest because of its distinct location between the halobacterial genera Haloquadratum and Halosarcin

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Coassembly and binning of a twenty-year metagenomic time-series from Lake Mendota.

Autor: Oliver T; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA. toliver4@spelman.edu.; Department of Biology, Spelman College, Atlanta, GA, 30314, USA. toliver4@spelman.edu., Varghese N; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., Roux S; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., Schulz F; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., Huntemann M; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., Clum A; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., Foster B; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., Foster B; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., Riley R; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., LaButti K; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., Egan R; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., Hajek P; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., Mukherjee S; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., Ovchinnikova G; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., Reddy TBK; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., Calhoun S; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., Hayes RD; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., Rohwer RR; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.; Department of Integrative Biology, The University of Texas at Austin, Austin, TX, 78712, USA., Zhou Z; Department of Bacteriology, University of Wisconsin-Madison, Madison, WI, 53706, USA., Daum C; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., Copeland A; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., Chen IA; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., Ivanova NN; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., Kyrpides NC; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., Mouncey NJ; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., Del Rio TG; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., Grigoriev IV; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.; Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, CA, 94720, USA., Hofmeyr S; Applied Math and Computational Research Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., Oliker L; Applied Math and Computational Research Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., Yelick K; Applied Math and Computational Research Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.; Electrical Engineering and Computer Sciences Department, University of California Berkeley, Berkeley, CA, 94720, USA., Anantharaman K; Department of Bacteriology, University of Wisconsin-Madison, Madison, WI, 53706, USA., McMahon KD; Department of Bacteriology, University of Wisconsin-Madison, Madison, WI, 53706, USA.; Department of Civil and Environmental Engineering, University of Wisconsin-Madison, Madison, WI, 53706, USA., Woyke T; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.; Life and Environmental Sciences, University of California Merced, Merced, CA, 95343, USA., Eloe-Fadrosh EA; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA. eaeloefadrosh@lbl.gov.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA. eaeloefadrosh@lbl.gov.

Publikováno v: Scientific data [Sci Data] 2024 Sep 04; Vol. 11 (1), pp. 966. Date of Electronic Publication: 2024 Sep 04.