Výsledky vyhledávání - "Deal Karin R"

Akademický článek

Genome-wide SNP discovery in walnut with an AGSNP pipeline updated for SNP discovery in allogamous organisms

Autor: You Frank M, Deal Karin R, Wang Jirui, Britton Monica T, Fass Joseph N, Lin Dawei, Dandekar Abhaya M, Leslie Charles A, Aradhya Mallikarjuna, Luo Ming-Cheng, Dvorak Jan

Publikováno v: BMC Genomics, Vol 13, Iss 1, p 354 (2012)

Abstract Background A genome-wide set of single nucleotide polymorphisms (SNPs) is a valuable resource in genetic research and breeding and is usually developed by re-sequencing a genome. If a genome sequence is not available, an alternative strategy

Externí odkaz: https://doaj.org/article/99fc9ef440944bcf8d6e6c06bf76345e

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Akademický článek

Annotation-based genome-wide SNP discovery in the large and complex Aegilops tauschii genome using next-generation sequencing without a reference genome sequence

Autor: Luo Ming-Cheng, Gu Yong Q, Deal Karin R, Huo Naxin, You Frank M, McGuire Patrick E, Dvorak Jan, Anderson Olin D

Publikováno v: BMC Genomics, Vol 12, Iss 1, p 59 (2011)

Abstract Background Many plants have large and complex genomes with an abundance of repeated sequences. Many plants are also polyploid. Both of these attributes typify the genome architecture in the tribe Triticeae, whose members include economically

Externí odkaz: https://doaj.org/article/d20d0bdd1b51444bbe5387eed3d68853

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Akademický článek

Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes

Publikováno v: BMC Genomics, Vol 11, Iss 1, p 702 (2010)

Abstract Background A genome-wide assessment of nucleotide diversity in a polyploid species must minimize the inclusion of homoeologous sequences into diversity estimates and reliably allocate individual haplotypes into their respective genomes. The

Externí odkaz: https://doaj.org/article/df83e1b3bb9b4dbca70ce70e88b37293

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Akademický článek

A new implementation of high-throughput five-dimensional clone pooling strategy for BAC library screening

Autor: Deal Karin R, Xu Kenong, Luo Ming-Cheng, You Frank M, Anderson Olin D, Dvorak Jan

Publikováno v: BMC Genomics, Vol 11, Iss 1, p 692 (2010)

Abstract Background A five-dimensional (5-D) clone pooling strategy for screening of bacterial artificial chromosome (BAC) clones with molecular markers utilizing highly-parallel Illumina GoldenGate assays and PCR facilitates high-throughput BAC clon

Externí odkaz: https://doaj.org/article/b0abeec823344871b764145f20f67d3f

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Akademický článek

Physical mapping of a large plant genome using global high-information-content-fingerprinting: the distal region of the wheat ancestor Aegilops tauschii chromosome 3DS

Autor: You Frank M, Anderson Olin D, Gill Bikram S, Ramsay Luke, Dvorak Jan, Luo Ming-Cheng, Fleury Delphine, Shoaei Zahra, Deal Karin R, Langridge Peter

Publikováno v: BMC Genomics, Vol 11, Iss 1, p 382 (2010)

Abstract Background Physical maps employing libraries of bacterial artificial chromosome (BAC) clones are essential for comparative genomics and sequencing of large and repetitive genomes such as those of the hexaploid bread wheat. The diploid ancest

Externí odkaz: https://doaj.org/article/2795229487c24b1ca45e35c5c70181f6

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Akademický článek

A high-throughput strategy for screening of bacterial artificial chromosome libraries and anchoring of clones on a genetic map constructed with single nucleotide polymorphisms

Autor: Deal Karin R, Ma Yaqin, Xu Kenong, Luo Ming-Cheng, Nicolet Charles M, Dvorak Jan

Publikováno v: BMC Genomics, Vol 10, Iss 1, p 28 (2009)

Abstract Background Current techniques of screening bacterial artificial chromosome (BAC) libraries for molecular markers during the construction of physical maps are slow, laborious and often assign multiple BAC contigs to a single locus on a geneti

Externí odkaz: https://doaj.org/article/5606a7af15894ed89f50f10611af89df

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