Zobrazeno 1 - 10
of 20
pro vyhledávání: '"De-Chang Yang"'
Publikováno v:
Nature Communications, Vol 11, Iss 1, Pp 1-13 (2020)
Single-cell RNA-seq (scRNA-seq) is being widely used to resolve cellular heterogeneity. Here, the authors present a cell-querying method built on a neural network-based generative model and a customized cell-to-cell similarity metric.
Externí odkaz:
https://doaj.org/article/3e0cf5f83c044e5689b8ee6fcaa6bccd
Publikováno v:
Molecular Biology and Evolution. 40
Gene loss is a prevalent source of genetic variation in genome evolution. Calling loss events effectively and efficiently is a critical step for systematically characterizing their functional and phylogenetic profiles genome wide. Here, we developed
Autor:
Feng Li, Jing-Jing Yang, Zong-Yi Sun, Lei Wang, Le-Yao Qi, Sina A, Yi-Qun Liu, Hong-Mei Zhang, Lei-Fan Dang, Shu-Jing Wang, Chun-Xiong Luo, Wei-Feng Nian, Seth O’Conner, Long-Zhen Ju, Wei-Peng Quan, Xiao-Kang Li, Chao Wang, De-Peng Wang, Han-Li You, Zhu-Kuan Cheng, Jia Yan, Fu-Chou Tang, De-Chang Yang, Chu-Wei Xia, Ge Gao, Yan Wang, Bao-Cai Zhang, Yi-Hua Zhou, Xing Guo, Sun-Huan Xiang, Huan Liu, Tian-Bo Peng, Xiao-Dong Su, Yong Chen, Qi Ouyang, Dong-Hui Wang, Da-Ming Zhang, Zhi-Hong Xu, Hong-Wei Hou, Shu-Nong Bai, Ling Li
A plant can be thought of as a colony comprising numerous growth buds, each developing to its own rhythm. Such lack of synchrony impedes efforts to describe core principles of plant morphogenesis, dissect the underlying mechanisms, and identify regul
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2e4ab73935fa1776101534d97d7e4bf8
https://doi.org/10.1101/2022.04.16.488569
https://doi.org/10.1101/2022.04.16.488569
Publikováno v:
Nature Communications, Vol 11, Iss 1, Pp 1-13 (2020)
Nature Communications
Nature Communications
Single-cell RNA-seq (scRNA-seq) is being used widely to resolve cellular heterogeneity. With the rapid accumulation of public scRNA-seq data, an effective and efficient cell-querying method is critical for the utilization of the existing annotations
Publikováno v:
Nucleic Acids Research
With the abundant mammalian lncRNAs identified recently, a comprehensive annotation resource for these novel lncRNAs is an urgent need. Since its first release in November 2016, AnnoLnc has been the only online server for comprehensively annotating n
Publikováno v:
Briefings in Bioinformatics. 23
Gene transcription and protein translation are two key steps of the “central dogma”. It is still a major challenge to quantitatively deconvolute factors contributing to the coding ability of transcripts in mammals. Here, we propose Ribosome Calcu
Publikováno v:
Methods in Molecular Biology ISBN: 9781071611579
While more than a hundred thousand long noncoding RNAs (lncRNAs) have been identified in human genome, their biological functions and regulation are largely elusive. Here we present AnnoLnc, a one-stop online annotation portal for human lncRNAs ( htt
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::e6a3603a7499c87c265920603a299d76
https://doi.org/10.1007/978-1-0716-1158-6_8
https://doi.org/10.1007/978-1-0716-1158-6_8
Autor:
Ming Yang, Xiang Li, Shen Lu, De-Chang Yang, Yuan Gao, Jie Qiao, Kexuan Chen, Yu Zhang, Feng Tian, Fan Zhou, Lin Wei, Xixi Liu, X. Sunney Xie, Liying Yan, Wenping Ma, Wang Jia, Fuchou Tang, Guangjun Yin, Dong Xing, Jing Wang, Siwei Zhang, Yanyi Huang, Longzhi Tan, Ge Gao, Runsheng He, Ayjan Semayel, David F. Lee, Jun Yong, Honggui Wu, Wenjie Sun, Alec R. Chapman, Y. J. Mao, Zhi-Jie Cao
SummaryBy circumventing cellular heterogeneity, single cell omics have now been widely utilized for cell typing in human tissues, culminating with the undertaking of human cell atlas aimed at characterizing all human cell types. However, more importa
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::37aa46923a7096e02b53ecec3cf0a240
https://doi.org/10.1101/2020.04.12.038000
https://doi.org/10.1101/2020.04.12.038000
Autor:
Ye Qi, Ge Gao, Lan Ke, Richard I. Gregory, Yingzi Cui, Jennie Ong, Li Ding, Mehdi Pirouz, Xuehui Lyu, De-Chang Yang, Peng Du
Publikováno v:
Nature
MicroRNAs (miRNAs) have essential functions during embryonic development, and their dysregulation causes cancer1,2. Altered global miRNA abundance is found in different tissues and tumours, which implies that precise control of miRNA dosage is import
Publikováno v:
Nucleic Acids Research
With advances in next-generation sequencing technologies, numerous novel transcripts in a large number of organisms have been identified. With the goal of fast, accurate assessment of the coding ability of RNA transcripts, we upgraded the coding pote