Zobrazeno 1 - 10
of 13
pro vyhledávání: '"Dayag Sheykhkarimli"'
Autor:
Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István A. Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth H. Wan, Joel S. Bader, Dawit Balcha, Wenting Bian, Benjamin W. Booth, Atina G. Coté, Steffi de Rouck, Alice Desbuleux, Kah Yong Goh, Dae-Kyum Kim, Jennifer J. Knapp, Wen Xing Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Julianne Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael A. Calderwood, David E. Hill, Susan E. Celniker, Marc Vidal, Norbert Perrimon, Stephanie E. Mohr
Publikováno v:
Nature Communications, Vol 14, Iss 1, Pp 1-16 (2023)
Abstract Generating reference maps of interactome networks illuminates genetic studies by providing a protein-centric approach to finding new components of existing pathways, complexes, and processes. We apply state-of-the-art methods to identify bin
Externí odkaz:
https://doaj.org/article/e41758225ff34dd59dda7af0132321d4
Autor:
Dae-Kyum Kim, Jennifer J. Knapp, Da Kuang, Aditya Chawla, Patricia Cassonnet, Hunsang Lee, Dayag Sheykhkarimli, Payman Samavarchi-Tehrani, Hala Abdouni, Ashyad Rayhan, Roujia Li, Oxana Pogoutse, Étienne Coyaud, Sylvie van der Werf, Caroline Demeret, Anne-Claude Gingras, Mikko Taipale, Brian Raught, Yves Jacob, Frederick P. Roth
Publikováno v:
G3: Genes, Genomes, Genetics, Vol 10, Iss 9, Pp 3399-3402 (2020)
The world is facing a global pandemic of COVID-19 caused by the SARS-CoV-2 coronavirus. Here we describe a collection of codon-optimized coding sequences for SARS-CoV-2 cloned into Gateway-compatible entry vectors, which enable rapid transfer into a
Externí odkaz:
https://doaj.org/article/fb21b6255c194af1b3ff91433376e797
Autor:
Nozomu Yachie, Evangelia Petsalaki, Joseph C Mellor, Jochen Weile, Yves Jacob, Marta Verby, Sedide B Ozturk, Siyang Li, Atina G Cote, Roberto Mosca, Jennifer J Knapp, Minjeong Ko, Analyn Yu, Marinella Gebbia, Nidhi Sahni, Song Yi, Tanya Tyagi, Dayag Sheykhkarimli, Jonathan F Roth, Cassandra Wong, Louai Musa, Jamie Snider, Yi‐Chun Liu, Haiyuan Yu, Pascal Braun, Igor Stagljar, Tong Hao, Michael A Calderwood, Laurence Pelletier, Patrick Aloy, David E Hill, Marc Vidal, Frederick P Roth
Publikováno v:
Molecular Systems Biology, Vol 12, Iss 4, Pp 1-17 (2016)
Abstract High‐throughput binary protein interaction mapping is continuing to extend our understanding of cellular function and disease mechanisms. However, we remain one or two orders of magnitude away from a complete interaction map for humans and
Externí odkaz:
https://doaj.org/article/0a18ae4d6e6e47358d45bf840a728d90
A map of binary SARS-CoV-2 protein interactions implicates host immune regulation and ubiquitination
Autor:
Isaiah Hazelwood, Dayag Sheykhkarimli, Jean-Claude Twizere, Michael A. Calderwood, Nishka Kishore, Atina G. Cote, Florent Laval, Pascal Falter-Braun, Luc Willems, Marc Vidal, Benjamin Weller, Ashyad Rayhan, Patricia Cassonnet, Frederick P. Roth, Claudia Falter, Tong Hao, Veronika Young, Melina Altmann, Rothballer Simin, Nora Marín-de la Rosa, Jennifer J. Knapp, Alexandra Strobel, Ramakrishnan Pandiarajan, Caroline Demeret, Kerstin Spirohn, Dave E Hill, Mayra Sauer, Patricia A Rodriguez Coloma, Oxana Pogoutse, Guillaume Dugied, Patrick Schwehn, Roujia Li, Dae-Kyum Kim, Lena Elorduy Vergara, Maria Nguyen, Chung Wen Lin, Bingruo B Liu, Yves Jacob
Publikováno v:
bioRxiv
Key steps in viral propagation, immune suppression, and pathology are mediated by direct, binary, physical interactions between viral and host proteins. To understand the biology of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infecti
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::25939c663edb400823c780751a7ab2da
https://hal-pasteur.archives-ouvertes.fr/pasteur-03209762
https://hal-pasteur.archives-ouvertes.fr/pasteur-03209762
Autor:
Hunsang Lee, Dayag Sheykhkarimli, Caroline Demeret, Payman Samavarchi-Tehrani, Hala Abdouni, Mikko Taipale, Patricia Cassonnet, Sylvie van der Werf, Roujia Li, Oxana Pogoutse, Anne-Claude Gingras, Yves Jacob, Brian Raught, Jennifer J. Knapp, Da Kuang, Ashyad Rayhan, Etienne Coyaud, Dae-Kyum Kim, Frederick P. Roth, Aditya Chawla
Publikováno v:
G3
G3, Genetics Society of America, 2020, 10 (9), pp.3399-3402. ⟨10.1534/g3.120.401554⟩
G3: Genes, Genomes, Genetics, Vol 10, Iss 9, Pp 3399-3402 (2020)
G3, 2020, 10 (9), pp.3399-3402. ⟨10.1534/g3.120.401554⟩
G3: Genes|Genomes|Genetics
G3, Genetics Society of America, 2020, 10 (9), pp.3399-3402. ⟨10.1534/g3.120.401554⟩
G3: Genes, Genomes, Genetics, Vol 10, Iss 9, Pp 3399-3402 (2020)
G3, 2020, 10 (9), pp.3399-3402. ⟨10.1534/g3.120.401554⟩
G3: Genes|Genomes|Genetics
The world is facing a global pandemic of COVID-19 caused by the SARS-CoV-2 coronavirus. Here we describe a collection of codon-optimized coding sequences for SARS-CoV-2 cloned into Gateway-compatible entry vectors, which enable rapid transfer into a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::101937692f1c45cfaee086c7642679a3
https://www.hal.inserm.fr/inserm-02964375
https://www.hal.inserm.fr/inserm-02964375
Autor:
Oxana Pogoutse, Caroline Demeret, Jennifer J. Knapp, Kuang D, Dayag Sheykhkarimli, Yves Jacob, Anne-Claude Gingras, Hala Abdouni, Payman Samavarchi-Tehrani, Patricia Cassonnet, Mikko Taipale, Brian Raught, Frederick P. Roth, van der Werf S, Etienne Coyaud, Dae-Kyum Kim, Lee H, Aditya Chawla, Ashyad Rayhan
The world is facing a major health crisis, the global pandemic of COVID-19 caused by the SARS-CoV-2 coronavirus, for which no approved antiviral agents or vaccines are currently available. Here we describe a collection of codon-optimized coding seque
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4bf4aeaf3a9911fdab4332ba89e15cd1
Autor:
Caroline Demeret, Etienne Coyaud, Patricia Cassonnet, Da Kuang, Ashyad Rayhan, Dae-Kyum Kim, Frederick P. Roth, Payman Samavarchi-Tehrani, Sylvie van der Werf, Hala Abdouni, Anne-Claude Gingras, Dayag Sheykhkarimli, Jennifer J. Knapp, Brian Raught, Yves Jacob
The world is facing a major health crisis, the global pandemic of COVID-19 caused by the SARS-CoV-2 coronavirus, for which no approved antiviral agents or vaccines are currently available. Here we describe a collection of codon-optimized coding seque
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ed3afdd2a1649fca5383aa30e0c5a241
Autor:
Eyal Simonovsky, Joseph C. Mellor, Amélie Dricot, Marc Vidal, Liana Goehring, Miquel Duran-Frigola, Florian Goebels, Dayag Sheykhkarimli, Thomas Rolland, Murat Tasan, John Rasla, Steffi De Rouck, Carles Pons, Sadie Schlabach, Yoseph Kassa, Claudia Colabella, Dong-Sic Choi, Yves Jacob, Joseph N. Paulson, Javier De Las Rivas, Madeleine F. Hardy, Francisco J. Campos-Laborie, Xinping Yang, Soon Gang Choi, Frederick P. Roth, Kerstin Spirohn, Nishka Kishore, Luke Lambourne, Cassandra D’Amata, Dawit Balcha, Adriana San-Miguel, Anupama Yadav, Anjali Gopal, Suet-Feung Chin, Suzanne Gaudet, Yang Wang, István Kovács, Elodie Hatchi, Natascha van Lieshout, Michael A. Calderwood, Yu Xia, Gloria M. Sheynkman, Robert J. Weatheritt, Marinella Gebbia, Atina G. Cote, Bridget E. Begg, Mohamed Helmy, Katja Luck, Bridget Teeking, Quan Zhong, Serena Landini, David E. Hill, Sudharshan Rangarajan, Georges Coppin, Ghazal Haddad, Omer Basha, Carl Pollis, Dylan Markey, Alice Desbuleux, Hanane Ennajdaoui, Dae-Kyum Kim, Vincent Tropepe, Roujia Li, Steven Deimling, Jennifer J. Knapp, Jan Tavernier, Mariana Babor, Benoit Charloteaux, Gary D. Bader, Alexander O. Tejeda, Aaron Richardson, Ruth Brignall, Ashyad Rayhan, Irma Lemmens, Tong Hao, Christian Bowman-Colin, Janusz Rak, David De Ridder, Jochen Weile, Wenting Bian, Jean-Claude Twizere, Patrick Aloy, Esti Yeger-Lotem, Meaghan Daley, Tiziana M. Cafarelli, Andrew MacWilliams, Miles W. Mee, Yun Shen
Publikováno v:
Digital.CSIC. Repositorio Institucional del CSIC
instname
Nature
Nature, Nature Publishing Group, 2020, 580 (7803), pp.402-408. ⟨10.1038/s41586-020-2188-x⟩
Nature, 2020, 580 (7803), pp.402-408. ⟨10.1038/s41586-020-2188-x⟩
instname
Nature
Nature, Nature Publishing Group, 2020, 580 (7803), pp.402-408. ⟨10.1038/s41586-020-2188-x⟩
Nature, 2020, 580 (7803), pp.402-408. ⟨10.1038/s41586-020-2188-x⟩
et al.
Global insights into cellular organization and genome function require comprehensive understanding of the interactome networks that mediate genotype–phenotype relationships1,2. Here we present a human ‘all-by-all’ reference interact
Global insights into cellular organization and genome function require comprehensive understanding of the interactome networks that mediate genotype–phenotype relationships1,2. Here we present a human ‘all-by-all’ reference interact
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::faac39e9886775ddfef26fed76c6c35f
http://hdl.handle.net/10261/222715
http://hdl.handle.net/10261/222715
Autor:
Estelle M.N. Laurent, Da Kuang, Frederick P. Roth, Michel Salzet, Sylvie van der Werf, David E. Hill, Caroline Demeret, Dae-Kyum Kim, Oxana Pogoutse, Georgios A. Pavlopoulos, Anne-Claude Gingras, Michael A. Calderwood, Marc Vidal, Hala Abdouni, Patricia Cassonnet, Yves Jacob, Anastassia V. Komarova, Aditya Chawla, Patrick Aloy, Isabelle Fournier, Ashyad Rayhan, Pascal Falter-Braun, Jean-Pascal Gimeno, Ulrich Stelzl, Roujia Li, Etienne Coyaud, Jennifer J. Knapp, Dayag Sheykhkarimli, Marie Duhamel, Payman Samavarchi Tehrani, Yorgos Sofianatos
Publikováno v:
bioRxiv
The worldwide SARS-CoV-2 outbreak poses a serious challenge to human societies and economies. SARS-CoV-2 proteins orchestrate complex pathogenic mechanisms that underlie COVID-19 disease. Thus, understanding how viral polypeptides rewire host protein
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f1c8c684c995eca63edc492d2a393199
https://hal-pasteur.archives-ouvertes.fr/pasteur-02940420/document
https://hal-pasteur.archives-ouvertes.fr/pasteur-02940420/document
Autor:
Madeleine F. Hardy, Bridget Teeking, Francisco J. Campos-Laborie, Dayag Sheykhkarimli, Dawit Balcha, Anjali Gopal, Marinella Gebbia, Ashyad Rayhan, Carles Pons, Gloria M. Sheynkman, Yves Jacob, Suzanne Gaudet, Aaron Richardson, Yoseph Kassa, Elodie Hatchi, Kerstin Spirohn, Dong-Sic Choi, Yu Xia, Eyal Simonovsky, David E. Hill, Hanane Ennajdaoui, Steven Deimling, Joseph N. Paulson, Natascha van Lieshout, Vincent Tropepe, Michael A. Calderwood, István Kovács, Gary D. Bader, Luke Lambourne, Sudharshan Rangarajan, Tiziana M. Cafarelli, Carl Pollis, Suet-Feung Chin, Alice Desbuleux, Andrew MacWilliams, Amélie Dricot, Jean-Claude Twizere, Patrick Aloy, Atina G. Cote, Marc Vidal, Jan Tavernier, Javier De Las Rivas, Cassandra D’Amata, Alexander O. Tejeda, Esti Yeger-Lotem, Liana Goehring, Joseph C. Mellor, Meaghan Daley, Irma Lemmens, Soon Gang Choi, Christian Bowman-Colin, Ghazal Haddad, Janusz Rak, Florian Goebels, Robert J. Weatheritt, Mariana Babor, Yang Wang, Thomas Rolland, Steffi De Rouck, Jochen Weile, Serena Landini, John Rasla, Sadie Schlabach, Nishka Kishore, Bridget E. Begg, Ruth Brignall, Quan Zhong, Tong Hao, David De Ridder, Claudia Colabella, Frederick P. Roth, Anupama Yadav, Mohamed Helmy, Katja Luck, Omer Basha, Dae-Kyum Kim, Benoit Charloteaux, Georges Coppin, Dylan Markey, Roujia Li, Miquel Duran-Frigola, Adriana San-Miguel, Wenting Bian, Miles W. Mee, Jennifer J. Knapp, Yun Shen, Murat Tasan, Xinping Yang
Publikováno v:
Nature
Global insights into cellular organization and function require comprehensive understanding of interactome networks. Similar to how a reference genome sequence revolutionized human genetics, a reference map of the human interactome network is critica
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a0dcc8c7bb64a39a5f3d25ef82f4debb
https://doi.org/10.1101/605451
https://doi.org/10.1101/605451