Methylation status of p16 and p14 genes in locally advanced rectal cancer: Potential clinical implication

Autor: Kožik Bojana, Kokanov Nikola, Knežević-Ušaj Slavica, Nikolić Ivan, Davidović Radoslav, Jovanović-Ćupić Snežana, Krajnović Milena

Publikováno v: Archives of Biological Sciences, Vol 70, Iss 4, Pp 681-690 (2018)

Methylation of p16 and p14 genes is a common event in colorectal cancers; however, their exact role in the prediction of patients’ outcome is unclear. We conducted this retrospective study to evaluate their potential predictive and/or prognostic ro

Externí odkaz: https://doaj.org/article/b5899f2f11c54e8da286909b443c7c5e

Immunohistochemical expression of cyclin-dependent kinase inhibitors p16 and p57 in rhabdomyosarcoma

Autor: Glumac, Sofija, Davidovic, Radoslav, Dozic, Branko, Hinic, Sasa, Pavlovic, Ivan, Drakulic, Dunja, Todorović, Ana, Pavlovic, Maja Medojevic, Skodric, Sanja Radojevic, Baralic, Ivana, Sopta, Jelena, Pejic, Snezana

Publikováno v: In Pathology - Research and Practice September 2021 225

Critical assessment of protein intrinsic disorder prediction

Autor: Necci, Marco, Piovesan, Damiano, Hoque Md, Tamjidul, Walsh, Ian, Iqbal, Sumaiya, Vendruscolo, Michele, Sormanni, Pietro, Wang, Chen, Raimondi, Daniele, Sharma, Ronesh, Zhou, Yaoqi, Litfin, Thomas, Galzitskaya Oxana, Valerianovna, Lobanov Michail, Yu, Vranken, Wim, Wallner, Björn, Mirabello, Claudio, Malhis, Nawar, Dosztányi, Zsuzsanna, Erdős, Gábor, Mészáros, Bálint, Gao, Jianzhao, Wang, Kui, Hu, Gang, Wu, Zhonghua, Sharma, Alok, Hanson, Jack, Paliwal, Kuldip, Callebaut, Isabelle, Bitard-Feildel, Tristan, Orlando, Gabriele, Peng, Zhenling, Xu, Jinbo, Wang, Sheng, Jones David, T., Cozzetto, Domenico, Meng, Fanchi, Yan, Jing, Gsponer, Jörg, Cheng, Jianlin, Wu, Tianqi, Kurgan, Lukasz, Promponas Vasilis, J., Tamana, Stella, Marino-Buslje, Cristina, Martínez-Pérez, Elizabeth, Chasapi, Anastasia, Ouzounis, Christos, Dunker A., Keith, Kajava Andrey, V., Leclercq Jeremy, Y., Aykac-Fas, Burcu, Lambrughi, Matteo, Maiani, Emiliano, Papaleo, Elena, Chemes Lucia, Beatriz, Álvarez, Lucía, González-Foutel Nicolás, S., Iglesias, Valentin, Pujols, Jordi, Ventura, Salvador, Palopoli, Nicolás, Benítez Guillermo, Ignacio, Parisi, Gustavo, Bassot, Claudio, Elofsson, Arne, Govindarajan, Sudha, Lamb, John, Salvatore, Marco, Hatos, András, Monzon Alexander, Miguel, Bevilacqua, Martina, Mičetić, Ivan, Minervini, Giovanni, Paladin, Lisanna, Quaglia, Federica, Leonardi, Emanuela, Davey, Norman, Horvath, Tamas, Kovacs Orsolya, Panna, Murvai, Nikoletta, Pancsa, Rita, Schad, Eva, Szabo, Beata, Tantos, Agnes, Macedo-Ribeiro, Sandra, Manso Jose, Antonio, Pereira Pedro José, Barbosa, Davidović, Radoslav, Veljkovic, Nevena, Hajdu-Soltész, Borbála, Pajkos, Mátyás, Szaniszló, Tamás, Guharoy, Mainak, Lazar, Tamas, Macossay-Castillo, Mauricio, Tompa, Peter, Tosatto Silvio C., E., Caid, Predictors, DisProt, Curators

Publikováno v: Nature Methods
Nature Methods, 2021, 18 (5), pp.472-481. ⟨10.1038/s41592-021-01117-3⟩
Nature Methods, Nature Publishing Group, 2021, ⟨10.1038/s41592-021-01117-3⟩
CONICET Digital (CONICET)
Consejo Nacional de Investigaciones Científicas y Técnicas
instacron:CONICET
Nature Methods, 2021, ⟨10.1038/s41592-021-01117-3⟩
Dipòsit Digital de Documents de la UAB
Universitat Autònoma de Barcelona
Nature Methods, Nature Publishing Group, 2021, 18 (5), pp.472-481. ⟨10.1038/s41592-021-01117-3⟩

Intrinsically disordered proteins, defying the traditional protein structure–function paradigm, are a challenge to study experimentally. Because a large part of our knowledge rests on computational predictions, it is crucial that their accuracy is

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::038090046479130e4d0ff797fc08550f
https://hal.sorbonne-universite.fr/hal-03329755/document

DisProt: intrinsic protein disorder annotation in 2020

Autor: Hatos, András, Hajdu-Soltész, Borbála, Monzon, Alexander M., Palopoli, Nicolas, Álvarez, Lucía, Aykac-Fas, Burcu, Bassot, Claudio, Benítez, Guillermo I., Bevilacqua, Martina, Chasapi, Anastasia, Chemes, Lucia, Davey, Norman E., Davidović, Radoslav, Dunker, A. Keith, Elofsson, Arne, Gobeill, Julien, Foutel, Nicolás S. González, Sudha, Govindarajan, Guharoy, Mainak, Horvath, Tamas, Iglesias, Valentin, Kajava, Andrey V., Kovacs, Orsolya P., Lamb, John, Lambrughi, Matteo, Lazar, Tamas, Leclercq, Jeremy Y., Leonardi, Emanuela, Macedo-Ribeiro, Sandra, Macossay-Castillo, Mauricio, Maiani, Emiliano, Manso, José A., Marino-Buslje, Cristina, Martínez-Pérez, Elizabeth, Mészáros, Bálint, Mičetić, Ivan, Minervini, Giovanni, Murvai, Nikoletta, Necci, Marco, Ouzounis, Christos A., Pajkos, Mátyás, Paladin, Lisanna, Pancsa, Rita, Papaleo, Elena, Parisi, Gustavo, Pasche, Emilie, Barbosa Pereira, Pedro J., Promponas, Vasilis J., Pujols, Jordi, Quaglia, Federica, Ruch, Patrick, Salvatore, Marco, Schad, Eva, Szabo, Beata, Szaniszló, Tamás, Tamana, Stella, Tantos, Agnes, Veljkovic, Nevena, Ventura, Salvador, Vranken, Wim, Dosztányi, Zsuzsanna, Tompa, Peter, Tosatto, Silvio C. E., Piovesan, Damiano

Publikováno v: Nucleic Acids Research
Nucleic Acids Res.
Nucleic Acids Research, Oxford University Press, 2019, ⟨10.1093/nar/gkz975⟩
Dipòsit Digital de Documents de la UAB
Universitat Autònoma de Barcelona
Hatos, A, Hajdu-Soltész, B, Monzon, A M, Palopoli, N, Álvarez, L, Aykac-Fas, B, Bassot, C, Benítez, G I, Bevilacqua, M, Chasapi, A, Chemes, L, Davey, N E, Davidović, R, Dunker, A K, Elofsson, A, Gobeill, J, Foutel, N S G, Sudha, G, Guharoy, M, Horvath, T, Iglesias, V, Kajava, A V, Kovacs, O P, Lamb, J, Lambrughi, M, Lazar, T, Leclercq, J Y, Leonardi, E, MacEdo-Ribeiro, S, MacOssay-Castillo, M, Maiani, E, Manso, J A, Marino-Buslje, C, Martínez-Pérez, E, Mészáros, B, Mičetić, I, Minervini, G, Murvai, N, Necci, M, Ouzounis, C A, Pajkos, M, Paladin, L, Pancsa, R, Papaleo, E, Parisi, G, Pasche, E, Barbosa Pereira, P J, Promponas, V J, Pujols, J, Quaglia, F, Ruch, P, Salvatore, M, Schad, E, Szabo, B, Szaniszló, T, Tamana, S, Tantos, A, Veljkovic, N, Ventura, S, Vranken, W, Dosztányi, Z, Tompa, P, Tosatto, S C E & Piovesan, D 2020, ' DisProt : Intrinsic protein disorder annotation in 2020 ', Nucleic Acids Research, vol. 48, no. D1, pp. D269-D276 . https://doi.org/10.1093/nar/gkz975
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The Database of Protein Disorder (DisProt, URL: https://disprot.org) provides manually curated annotations of intrinsically disordered proteins from the literature. Here we report recent developments with DisProt (version 8), including the doubling o

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bd4170a83588920eb94425162ce0c585
http://gnosis.library.ucy.ac.cy/handle/7/61950

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

Autor: Zhou, Naihui, Jiang, Yuxiang, Bergquist, Timothy R, Lee, Alexandra J, Kacsoh, Balint Z, Crocker, Alex W, Lewis, Kimberley A, Georghiou, George, Nguyen, Huy N, Hamid, Md Nafiz, Davis, Larry, Dogan, Tunca, Atalay, Volkan, Rifaioglu, Ahmet S, Dalkıran, Alperen, Cetin Atalay, Rengul, Zhang, Chengxin, Hurto, Rebecca L, Freddolino, Peter L, Zhang, Yang, Bhat, Prajwal, Supek, Fran, Fernández, José M, Gemovic, Branislava, Perovic, Vladimir R, Davidović, Radoslav S, Sumonja, Neven, Veljkovic, Nevena, Asgari, Ehsaneddin, Mofrad, Mohammad RK, Profiti, Giuseppe, Savojardo, Castrense, Martelli, Pier Luigi, Casadio, Rita, Boecker, Florian, Schoof, Heiko, Kahanda, Indika, Thurlby, Natalie, McHardy, Alice C, Renaux, Alexandre, Saidi, Rabie, Gough, Julian, Freitas, Alex A, Antczak, Magdalena, Fabris, Fabio, Wass, Mark N, Hou, Jie, Cheng, Jianlin, Wang, Zheng, Romero, Alfonso E, Paccanaro, Alberto, Yang, Haixuan, Goldberg, Tatyana, Zhao, Chenguang, Holm, Liisa, Törönen, Petri, Medlar, Alan J, Zosa, Elaine, Borukhov, Itamar, Novikov, Ilya, Wilkins, Angela, Lichtarge, Olivier, Chi, Po-Han, Tseng, Wei-Cheng, Linial, Michal, Rose, Peter W, Dessimoz, Christophe, Vidulin, Vedrana, Dzeroski, Saso, Sillitoe, Ian, Das, Sayoni, Lees, Jonathan Gill, Jones, David T, Wan, Cen, Cozzetto, Domenico, Fa, Rui, Torres, Mateo, Warwick Vesztrocy, Alex, Rodriguez, Jose Manuel, Tress, Michael L, Frasca, Marco, Notaro, Marco, Grossi, Giuliano, Petrini, Alessandro, Re, Matteo, Valentini, Giorgio, Mesiti, Marco, Roche, Daniel B, Reeb, Jonas, Ritchie, David W, Aridhi, Sabeur, Alborzi, Seyed Ziaeddin, Devignes, Marie-Dominique, Koo, Da Chen Emily, Bonneau, Richard, Gligorijević, Vladimir, Barot, Meet, Fang, Hai, Toppo, Stefano, Lavezzo, Enrico

Publikováno v: Genome biology, vol 20, iss 1

BACKGROUND:The Critical Assessment of Functional Annotation (CAFA) is an ongoing, global, community-driven effort to evaluate and improve the computational annotation of protein function. RESULTS:Here, we report on the results of the third CAFA chall

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::be043e675e6dbbc59e8700a00783d11e
https://escholarship.org/uc/item/0zt8n2q8