Methylation status of p16 and p14 genes in locally advanced rectal cancer: Potential clinical implication

Autor: Kožik Bojana, Kokanov Nikola, Knežević-Ušaj Slavica, Nikolić Ivan, Davidović Radoslav, Jovanović-Ćupić Snežana, Krajnović Milena

Publikováno v: Archives of Biological Sciences, Vol 70, Iss 4, Pp 681-690 (2018)

Methylation of p16 and p14 genes is a common event in colorectal cancers; however, their exact role in the prediction of patients’ outcome is unclear. We conducted this retrospective study to evaluate their potential predictive and/or prognostic ro

Externí odkaz: https://doaj.org/article/b5899f2f11c54e8da286909b443c7c5e

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Prediction of GO terms for IDPs based on highly connected components in PPI networks

Autor: Grbić, Milana, Gemović, Branislava, Davidović, Radoslav, Kartelj, Aleksandar, Matić, Dragan

Publikováno v: Biologia Serbica : Belgrade BioInformatics Conference : BelBi2021 : program and the book of abstracts; June 21-25

Partitioning large biological networks can help biologists to retrieve new information for particular biological structures. In literature, various methods for partitioning and clustering biological networks have been proposed. The aim of such a netw

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od______4175::9d3ef40f1a24ee25f45a9d3fca2b3e8e
https://vinar.vin.bg.ac.rs/handle/123456789/11017

DisProt: intrinsic protein disorder annotation in 2020

Autor: Hatos, András, Hajdu-Soltész, Borbála, Monzon, Alexander M., Palopoli, Nicolas, Álvarez, Lucía, Aykac-Fas, Burcu, Bassot, Claudio, Benítez, Guillermo I., Bevilacqua, Martina, Chasapi, Anastasia, Chemes, Lucia, Davey, Norman E., Davidović, Radoslav, Dunker, A. Keith, Elofsson, Arne, Gobeill, Julien, Foutel, Nicolás S. González, Sudha, Govindarajan, Guharoy, Mainak, Horvath, Tamas, Iglesias, Valentin, Kajava, Andrey V., Kovacs, Orsolya P., Lamb, John, Lambrughi, Matteo, Lazar, Tamas, Leclercq, Jeremy Y., Leonardi, Emanuela, Macedo-Ribeiro, Sandra, Macossay-Castillo, Mauricio, Maiani, Emiliano, Manso, José A., Marino-Buslje, Cristina, Martínez-Pérez, Elizabeth, Mészáros, Bálint, Mičetić, Ivan, Minervini, Giovanni, Murvai, Nikoletta, Necci, Marco, Ouzounis, Christos A., Pajkos, Mátyás, Paladin, Lisanna, Pancsa, Rita, Papaleo, Elena, Parisi, Gustavo, Pasche, Emilie, Barbosa Pereira, Pedro J., Promponas, Vasilis J., Pujols, Jordi, Quaglia, Federica, Ruch, Patrick, Salvatore, Marco, Schad, Eva, Szabo, Beata, Szaniszló, Tamás, Tamana, Stella, Tantos, Agnes, Veljkovic, Nevena, Ventura, Salvador, Vranken, Wim, Dosztányi, Zsuzsanna, Tompa, Peter, Tosatto, Silvio C. E., Piovesan, Damiano

Publikováno v: Nucleic Acids Research
Nucleic Acids Res.
Nucleic Acids Research, Oxford University Press, 2019, ⟨10.1093/nar/gkz975⟩
Dipòsit Digital de Documents de la UAB
Universitat Autònoma de Barcelona
Hatos, A, Hajdu-Soltész, B, Monzon, A M, Palopoli, N, Álvarez, L, Aykac-Fas, B, Bassot, C, Benítez, G I, Bevilacqua, M, Chasapi, A, Chemes, L, Davey, N E, Davidović, R, Dunker, A K, Elofsson, A, Gobeill, J, Foutel, N S G, Sudha, G, Guharoy, M, Horvath, T, Iglesias, V, Kajava, A V, Kovacs, O P, Lamb, J, Lambrughi, M, Lazar, T, Leclercq, J Y, Leonardi, E, MacEdo-Ribeiro, S, MacOssay-Castillo, M, Maiani, E, Manso, J A, Marino-Buslje, C, Martínez-Pérez, E, Mészáros, B, Mičetić, I, Minervini, G, Murvai, N, Necci, M, Ouzounis, C A, Pajkos, M, Paladin, L, Pancsa, R, Papaleo, E, Parisi, G, Pasche, E, Barbosa Pereira, P J, Promponas, V J, Pujols, J, Quaglia, F, Ruch, P, Salvatore, M, Schad, E, Szabo, B, Szaniszló, T, Tamana, S, Tantos, A, Veljkovic, N, Ventura, S, Vranken, W, Dosztányi, Z, Tompa, P, Tosatto, S C E & Piovesan, D 2020, ' DisProt : Intrinsic protein disorder annotation in 2020 ', Nucleic Acids Research, vol. 48, no. D1, pp. D269-D276 . https://doi.org/10.1093/nar/gkz975
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The Database of Protein Disorder (DisProt, URL: https://disprot.org) provides manually curated annotations of intrinsically disordered proteins from the literature. Here we report recent developments with DisProt (version 8), including the doubling o

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bd4170a83588920eb94425162ce0c585
http://gnosis.library.ucy.ac.cy/handle/7/61950

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

Autor: Zhou, Naihui, Jiang, Yuxiang, Bergquist, Timothy R, Lee, Alexandra J, Kacsoh, Balint Z, Crocker, Alex W, Lewis, Kimberley A, Georghiou, George, Nguyen, Huy N, Hamid, Md Nafiz, Davis, Larry, Dogan, Tunca, Atalay, Volkan, Rifaioglu, Ahmet S, Dalkıran, Alperen, Cetin Atalay, Rengul, Zhang, Chengxin, Hurto, Rebecca L, Freddolino, Peter L, Zhang, Yang, Bhat, Prajwal, Supek, Fran, Fernández, José M, Gemovic, Branislava, Perovic, Vladimir R, Davidović, Radoslav S, Sumonja, Neven, Veljkovic, Nevena, Asgari, Ehsaneddin, Mofrad, Mohammad RK, Profiti, Giuseppe, Savojardo, Castrense, Martelli, Pier Luigi, Casadio, Rita, Boecker, Florian, Schoof, Heiko, Kahanda, Indika, Thurlby, Natalie, McHardy, Alice C, Renaux, Alexandre, Saidi, Rabie, Gough, Julian, Freitas, Alex A, Antczak, Magdalena, Fabris, Fabio, Wass, Mark N, Hou, Jie, Cheng, Jianlin, Wang, Zheng, Romero, Alfonso E, Paccanaro, Alberto, Yang, Haixuan, Goldberg, Tatyana, Zhao, Chenguang, Holm, Liisa, Törönen, Petri, Medlar, Alan J, Zosa, Elaine, Borukhov, Itamar, Novikov, Ilya, Wilkins, Angela, Lichtarge, Olivier, Chi, Po-Han, Tseng, Wei-Cheng, Linial, Michal, Rose, Peter W, Dessimoz, Christophe, Vidulin, Vedrana, Dzeroski, Saso, Sillitoe, Ian, Das, Sayoni, Lees, Jonathan Gill, Jones, David T, Wan, Cen, Cozzetto, Domenico, Fa, Rui, Torres, Mateo, Warwick Vesztrocy, Alex, Rodriguez, Jose Manuel, Tress, Michael L, Frasca, Marco, Notaro, Marco, Grossi, Giuliano, Petrini, Alessandro, Re, Matteo, Valentini, Giorgio, Mesiti, Marco, Roche, Daniel B, Reeb, Jonas, Ritchie, David W, Aridhi, Sabeur, Alborzi, Seyed Ziaeddin, Devignes, Marie-Dominique, Koo, Da Chen Emily, Bonneau, Richard, Gligorijević, Vladimir, Barot, Meet, Fang, Hai, Toppo, Stefano, Lavezzo, Enrico

Publikováno v: Genome biology, vol 20, iss 1

BACKGROUND:The Critical Assessment of Functional Annotation (CAFA) is an ongoing, global, community-driven effort to evaluate and improve the computational annotation of protein function. RESULTS:Here, we report on the results of the third CAFA chall

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::be043e675e6dbbc59e8700a00783d11e
https://escholarship.org/uc/item/0zt8n2q8