RNA Viromics of Southern California Wastewater and Detection of SARS-CoV-2 Single-Nucleotide Variants

Autor: Joseph Kapcia, Jeffrey Chokry, David Wanless, Jason A. Rothman, Joshua A. Steele, Lucy Mao, Eric D Adams, Theresa B Loveless, John F. Griffith, Madison Griffith, Kylie Langlois, Amity G. Zimmer-Faust, Katrine Whiteson

Publikováno v: Applied and environmental microbiology, vol 87, iss 23
Applied and Environmental Microbiology

Municipal wastewater provides an integrated sample of a diversity of human-associated microbes across a sewershed, including viruses. Wastewater-based epidemiology (WBE) is a promising strategy to detect pathogens and may serve as an early warning sy

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b3d1dd7eee469df90db0270f42cc51da
https://escholarship.org/uc/item/2j484065

The Fellowship of the Ring Test: DNAqua-Net WG2 initiative to compare diatom metabarcoding protocols used in routine freshwater biomonitoring for standardisation

Autor: Laure Apothéloz-Perret-Gentil, Martyn Kelly, Valentin Vasselon, Cécile Chardon, Matthieu Lewis, Clémence Genthon, Susanna Theroux, Andreia Mortágua, Tina Elersek, Juliane Bettig, Jan Pawlowski, Erik Pilgrim, Camilla Capelli, Marina Moletta-Denat, Rosa Trobajo, Ana Baričević, Kálmán Tapolczai, Salomé F.P. Almeida, David Wanless, Kevin K. Beentjes, Jonathan Warren, Kerry Walsh, Maša Zupančič, Jonathan Porter, Frédéric Rimet, Jonas Zimmermann, Marlen Vasquez Hadjilyra, Melanie Hurtz, Louis Jacas, Karmen Stanic, Martin Pfannkuchen, Maria Kahlert, Berry van der Hoorn, Agnès Bouchez, Éva Ács, Federica Mauri, Javier Pérez Burillo, Mónika Duleba, Bonnie Bailet, Karl Andree, Jan Macher, Panayiota Pissaridou

Publikováno v: ARPHA Conference Abstracts 4: e65142

During the past decade genetic approaches have been developed to monitor biodiversity in aquatic ecosystems. These enable access to taxonomic and genetic information from biological communities using DNA from environmental samples (e.g. water, biofil

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::58be12cef76001ae5aeb1d0df7cca884
https://zenodo.org/record/4600150

Perspectives from internships and co-ops with industry

Autor: David Wanless

Publikováno v: 2013 ASEE Annual Conference & Exposition Proceedings.

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::2b919950e9d786839d4f56cb33cf4af9
https://doi.org/10.18260/1-2--22349

Use of Quantitative Real-Time PCR for Direct Detection of Serratia marcescens in Marine and Other Aquatic Environments

Autor: Christopher D. Sinigalliano, Jessica Joyner, Erin K. Lipp, David Wanless

Publikováno v: Applied and Environmental Microbiology. 80:1679-1683

Serratia marcescens is the etiological agent of acroporid serratiosis, a distinct form of white pox disease in the threatened coral Acropora palmata . The pathogen is commonly found in untreated human waste in the Florida Keys, which may contaminate

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3d765fd07f9083c075dbdded4d9a81a6
https://doi.org/10.1128/aem.02755-13

The genome of the African trypanosome Trypanosoma brucei

Autor: David W. Johnson, Barclay G. Barrell, Sharon Moule, Luke J. Tallon, Ian Goodhead, Lihua Hou, Jeremy Peterson, Danielle Walker, David M. A. Martin, Sara E. Melville, Kristine Jones, Martin Aslett, Appolinaire Djikeng, Neil Hall, Inna Cherevach, Hean Koo, Ester Rabbinowitsch, Steven L. Salzberg, Sarah Sharp, Mark Raymond Adams, Claire Arrowsmith, Andrew Barron, Elisabetta Ullu, Rebecca Atkin, Mark Simmonds, Al Ivens, John E. Donelson, Elodie Ghedin, P. Mooney, Adrian Tivey, Tamara Feldblyum, Audrey Fraser, Natasha Larke, Keith Gull, Jonathon Doggett, Doug Ormond, Jennifer R. Wortman, Claire M. Fraser, Carol Churcher, Mark Carrington, Chris P Reitter, Anjana J. Simpson, Joshua Shallom, Louise Clark, Brian J. Haas, Arnaud Kerhornou, Andrew Tait, Matthew Berriman, Mandy Sanders, Halina Norbertczak, Justin Johnson, Sally Whitehead, Jessica B. Hostetler, Scott M. Landfear, Frédéric Bringaud, Barbara Harris, Ann Cronin, J. David Barry, Fred R. Opperdoes, U. Cecilia M. Alsmark, Brian White, Craig Corton, John Woodward, Najib M. El-Sayed, Alexandra Line, Elisabet Caler, Annette MacLeod, Heidi Hauser, T. Martin Embley, Marie-Adèle Rajandream, Daniella Castanheira Bartholomeu, Mark C. Field, Angela Lord, Linda Hannick, C. Michael R. Turner, Gareth W. Morgan, Hubert Renauld, Bill Wickstead, Christiane Hertz-Fowler, Gaëlle Blandin, Shiliang Wang, Christopher S. Peacock, Tracey-Jane Chillingworth, Michael A. Quail, Karen Mungall, Robert L. Davies, Vanessa Leech, Alan H. Fairlamb, Susan Van Aken, Nicola Lennard, N. Hamlin, Ulrike Böhme, Karen Brooks, Owen White, Christopher Larkin, Lucio Marcello, Zahra Hance, David Harper, David Wanless, Grace Pai, Kay Jagels, Seth Schobel

African trypanosomes cause human sleeping sickness and livestock trypanosomiasis in sub-Saharan Africa. We present the sequence and analysis of the 11 megabase-sized chromosomes of Trypanosoma brucei . The 26-megabase genome contains 9068 predicted g

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3750ef339c57c8ea7b18444005230de3
https://ora.ox.ac.uk/objects/uuid:68a73f00-8613-4389-bf92-d156df3b8386