Zobrazeno 1 - 10
of 248
pro vyhledávání: '"David W. Ussery"'
Publikováno v:
Frontiers in Bioinformatics, Vol 4 (2024)
The major histocompatibility (MHC) locus, also known as the Human Leukocyte Antigen (HLA) genes, is located on the short arm of chromosome 6, and contains three regions (Class I, Class II and Class III). This 5 Mbp locus is one of the most variable r
Externí odkaz:
https://doaj.org/article/ae23f0bb88264217a962e2e4dd432723
Autor:
Sangam Kandel, Susanna L. Hartzell, Ashton K. Ingold, Grace A. Turner, Joshua L. Kennedy, David W. Ussery
Publikováno v:
Frontiers in Microbiology, Vol 15 (2024)
IntroductionWhole Genome Sequencing (WGS) of the SARS-CoV-2 virus is crucial in the surveillance of the COVID-19 pandemic. Several primer schemes have been developed to sequence nearly all of the ~30,000 nucleotide SARS-CoV-2 genome, using a multiple
Externí odkaz:
https://doaj.org/article/58b8eb2501bb4f2ea09b4bba97c5a216
Autor:
Kaleb Abram, Zulema Udaondo, Carissa Bleker, Visanu Wanchai, Trudy M. Wassenaar, Michael S. Robeson, David W. Ussery
Publikováno v:
Communications Biology, Vol 4, Iss 1, Pp 1-12 (2021)
Kaleb Abram and Zulema Udaondo et al. analyze over 100,000 publicly available E. coli and Shigella genome sequences and perform a Mash-based analysis to identify 14 unique phylogroups. Their results reveal that most of the sequenced E. coli genomes b
Externí odkaz:
https://doaj.org/article/04d6eb542d164c8788a178b4adabb5b0
Autor:
Thidathip Wongsurawat, Piroon Jenjaroenpun, Annick De Loose, Duah Alkam, David W. Ussery, Intawat Nookaew, Yuet-Kin Leung, Shuk-Mei Ho, John D. Day, Analiz Rodriguez
Publikováno v:
Acta Neuropathologica Communications, Vol 8, Iss 1, Pp 1-13 (2020)
Abstract Molecular biomarkers provide both diagnostic and prognostic results for patients with diffuse glioma, the most common primary brain tumor in adults. Here, we used a long-read nanopore-based sequencing technique to simultaneously assess IDH m
Externí odkaz:
https://doaj.org/article/692d00e2e0df4aeeb11fc2273717298d
Publikováno v:
Computational and Structural Biotechnology Journal, Vol 18, Iss , Pp 3890-3896 (2020)
Large-scale protein analysis has been used to characterize large numbers of proteins across numerous species. One of the applications is to use as a high-throughput screening method for pathogenicity of genomes. Unlike sequence homology methods, prot
Externí odkaz:
https://doaj.org/article/6c39bd9e7310455d9365411341f67df3
Autor:
Horacio Gomez-Acevedo, John D. Patterson, Sehrish Sardar, Murat Gokden, Bhaskar C. Das, David W. Ussery, Analiz Rodriguez
Publikováno v:
BMC Cancer, Vol 19, Iss 1, Pp 1-10 (2019)
Abstract Background SMARCB1-deficient sinonasal carcinoma (SDSC) is an aggressive subtype of head and neck cancers that has a poor prognosis despite multimodal therapy. We present a unique case with next generation sequencing data of a patient who ha
Externí odkaz:
https://doaj.org/article/4b113640e04d4301bd6ab5d91e26e122
Publikováno v:
MicrobiologyOpen, Vol 9, Iss 2, Pp n/a-n/a (2020)
Abstract The intraspecies genomic diversity of the single‐strand RNA (+) virus species hepatitis A virus (Hepatovirus), hepatitis C virus (Hepacivirus), and hepatitis E virus (Orthohepevirus) was compared. These viral species all can cause liver in
Externí odkaz:
https://doaj.org/article/1b59a8580805474685bdcfa665f0200c
Autor:
Thidathip Wongsurawat, Niracha Athipanyasilp, Piroon Jenjaroenpun, Se-Ran Jun, Bualan Kaewnapan, Trudy M. Wassenaar, Nattawat Leelahakorn, Nasikarn Angkasekwinai, Wannee Kantakamalakul, David W. Ussery, Ruengpung Sutthent, Intawat Nookaew, Navin Horthongkham
Publikováno v:
Emerging Infectious Diseases, Vol 24, Iss 9, Pp 1758-1761 (2018)
We sequenced the virus genomes from 3 pregnant women in Thailand with Zika virus diagnoses. All had infections with the Asian lineage. The woman infected at gestational week 9, and not those infected at weeks 20 and 24, had a fetus with microcephaly.
Externí odkaz:
https://doaj.org/article/e4754f7aca184a2297ed566d9aa1e104
Autor:
Se-Ran Jun, Trudy M. Wassenaar, Visanu Wanchai, Preecha Patumcharoenpol, Intawat Nookaew, David W. Ussery
Publikováno v:
BMC Bioinformatics, Vol 18, Iss S14, Pp 81-92 (2017)
Abstract Background Zika virus (ZIKV) is an emerging human pathogen. Since its arrival in the Western hemisphere, from Africa via Asia, it has become a serious threat to pregnant women, causing microcephaly and other neuropathies in developing fetuse
Externí odkaz:
https://doaj.org/article/ab97f281b81a4fcdb5b804b8b17728ca
Publikováno v:
Frontiers in Microbiology, Vol 10 (2019)
To achieve maximum transmission chain tracking in the current Ebola outbreak, whole genome sequencing (WGS) has been proposed to provide optimal information. However, WGS remains a costly and time-intensive procedure that is poorly suited for the lar
Externí odkaz:
https://doaj.org/article/70ec56a399b34529941bfb26dae2cee1