Zobrazeno 1 - 10
of 27
pro vyhledávání: '"David Stoddart"'
Autor:
Aditya S. Deshpande, Netha Ulahannan, Matthew Pendleton, Xiaoguang Dai, Lynn Ly, Julie M. Behr, Stefan Schwenk, Will Liao, Michael A. Augello, Carly Tyer, Priyesh Rughani, Sarah Kudman, Huasong Tian, Hannah G. Otis, Emily Adney, David Wilkes, Juan Miguel Mosquera, Christopher E. Barbieri, Ari Melnick, David Stoddart, Daniel J. Turner, Sissel Juul, Eoghan Harrington, Marcin Imieliński
Publikováno v:
Nature Biotechnology. 40:1488-1499
High-order three-dimensional (3D) interactions between more than two genomic loci are common in human chromatin, but their role in gene regulation is unclear. Previous high-order 3D chromatin assays either measure distant interactions across the geno
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::fb8ee58670be9489c6175a124e6506d6
https://doi.org/10.1038/s41587-022-01289-z
https://doi.org/10.1038/s41587-022-01289-z
Autor:
Daniel J. Turner, Gretta Marie Sharp, Miten Jain, Mark Akeson, Richard R. Arnold, Sarah L. Castro-Wallace, Sarah Stahl-Rommel, Serena M. Aunon-Chancellor, Aaron S. Burton, Kristen K. John, Benedict Paten, Sissel Juul, David Stoddart, Christian L. Castro, Hang N. Nguyen
Publikováno v:
Genes
Genes, Vol 12, Iss 106, p 106 (2021)
Volume 12
Issue 1
Genes, Vol 12, Iss 106, p 106 (2021)
Volume 12
Issue 1
For the past two decades, microbial monitoring of the International Space Station (ISS) has relied on culture-dependent methods that require return to Earth for analysis. This has a number of limitations, with the most significant being bias towards
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5e8507adb44f6ee75e5aa7771b9a4cdb
http://europepmc.org/articles/PMC7830261
http://europepmc.org/articles/PMC7830261
Autor:
Hope R. Lapointe, Phillip James, Nicholas J. Loman, Andrew D. Smith, Richard Harrigan, Joshua Quick, Kimia Kamelian, Natalie Sparks, Ji Hyun Choi, Terrance P. Snutch, Natalie Prystajecky, Ian Goodfellow, Sam J. Wilson, Grant Hall, Arthur Wickenhagen, David Stoddart, John R. Tyson
Publikováno v:
bioRxiv
article-version (status) pre
article-version (number) 1
article-version (status) pre
article-version (number) 1
Genome sequencing has been widely deployed to study the evolution of SARS-CoV-2 with more than 90,000 genome sequences uploaded to the GISAID database. We published a method for SARS-CoV-2 genome sequencing (https://www.protocols.io/view/ncov-2019-se
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bee9bd9c9508381a9847f35685cf3e1c
https://doi.org/10.1101/2020.09.04.283077
https://doi.org/10.1101/2020.09.04.283077
Autor:
Sissel Juul, Daniel J. Turner, John Beaulaurier, David Stoddart, Phillip James, Eoghan D. Harrington, Lynn Ly, Stuart William Reid
LamPORE™ is a rapid way of testing/screening large numbers of samples for the presence or absence of SARS-CoV-2, the virus causing COVID-19. It combines barcoded multi-target amplification, 15-minute barcoded library preparation and real-time nanop
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6323937098a1740f6c865b50284c2040
https://doi.org/10.1101/2020.08.07.20161737
https://doi.org/10.1101/2020.08.07.20161737
Autor:
Daniel J. Turner, Kristen K. John, Eoghan D. Harrington, David Stoddart, Sissel Juul, Sarah E. Stahl, Mark Akeson, Aaron S. Burton, Benedict Paten, Miten Jain, Sarah L. Castro-Wallace
Publikováno v:
Genes, Vol 11, Iss 1, p 76 (2020)
Genes
Volume 11
Issue 1
Genes
Volume 11
Issue 1
The MinION sequencer has made in situ sequencing feasible in remote locations. Following our initial demonstration of its high performance off planet with Earth-prepared samples, we developed and tested an end-to-end, sample-to-sequencer process that
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b32203e9e5f32da8d8e1e6d199e843dd
https://www.mdpi.com/2073-4425/11/1/76
https://www.mdpi.com/2073-4425/11/1/76
Publikováno v:
Procedia CIRP. 62:396-399
This paper presents a quantitative assessment of uncertainty for the stereo calibration at different cameras angle and control object 3D reconstruction. Stereo-photogrammetry with high resolution commercially available digital cameras is applied to d
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::e04032c93553a31ecd1640409371e895
https://doi.org/10.1016/j.procir.2016.07.081
https://doi.org/10.1016/j.procir.2016.07.081
Publikováno v:
Procedia CIRP. 62:400-404
Optical triangulation based scanners have been widely used in industry, mainly for reverse engineering applications and freeform inspection tasks. Error contributions of these optical scanners include many influencing factors like surface quality and
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::e2be44c66782cd08293913f3f4d40fe2
https://doi.org/10.1016/j.procir.2016.06.080
https://doi.org/10.1016/j.procir.2016.06.080
Autor:
Mark Akeson, Hugh E. Olsen, Karen H. Miga, Benedict Paten, David Haussler, Daniel J. Turner, Huntington F. Willard, Kira V. Bulazel, David Stoddart, Miten Jain
Publikováno v:
Nature Biotechnology. 36:321-323
The human genome reference sequence remains incomplete owing to the challenge of assembling long tracts of near-identical tandem repeats in centromeres. We implemented a nanopore sequencing strategy to generate high-quality reads that span hundreds o
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ffe64b76e99556ae83e41621b7c5fb7f
https://doi.org/10.1038/nbt.4109
https://doi.org/10.1038/nbt.4109
Autor:
Marcin Imielinski, Daniel J. Turner, Matthew Pendleton, Priyesh Rughani, Stefan Schwenk, Netha Ulahannan, David Wilkes, Sarah Kudman, Huasong Tian, Xiaoguang Dai, Sissel Juul, Julie M. Behr, Aditya Deshpande, Juan Miguel Mosquera, David Stoddart, Eoghan D. Harrington, Carly Tyer, Emily M. Adney
Higher-order chromatin structure arises from the combinatorial physical interactions of many genomic loci. To investigate this aspect of genome architecture we developed Pore-C, which couples chromatin conformation capture with Oxford Nanopore Techno
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0483dcc3651516c0e3742b73fe36f2a1
https://doi.org/10.1101/833590
https://doi.org/10.1101/833590
Autor:
Björn Stade, Lotte Moens, Joachim Fritzsche, Sascha Sauer, Tom Brown, Xia Teng, David Stoddart, Anders Kristensen, Kalim U. Mir, Afaf H. El-Sagheer, Andre Franke, Nadine Schracke, Jonas O. Tegenfeldt, Mats Nilsson, Elin Falk-Sörqvist, Andrew John Heron, Jane Kaye, Giovanni Maglia, Nathalie Zahra, Abdou ElSharawy, Colin Veal, Rodolphe Marie, Fredrik Persson, Jonathan Mangion, Marco Mignardi, Joop M.L.M. van Helvoort, Jörg Tost, Dvir Rotem, Ivo Gut, Hagan Bayley, Achillefs N. Kapanidis, Vincent Picaud, Spencer J. Gibson, Liqin Dong, Thomas Brefort, Henrik Flyvbjerg, Markus Beier, Emile Schyns, Johannes Hohlbein, Pieter Jan Van Der Zaag, Florence Mauger, Jelle Oostmeijer, Peter Freeman, Simon Heath, Geraint Evans, Owen Lancaster, Hans Lehrach, Simone Guenther, Michael Forster, David L.V. Bauer, Rongqin Ke, Jennifer Sengenes, Steven McGinn, Jonas Nyvold Pedersen, Marta Gut, Isabelle Heath-Brun, Ludovic Le Reste, Camilla Freitag, Anthony J. Brookes, Björn Ekström, Simon Fredriksson, Mats Gullberg, Florian Mertes, James P Willcocks, Peer F. Stähler, Ruud Out, Cees Dekker
Publikováno v:
New Biotechnology, 33(3), 311-330. ELSEVIER SCIENCE BV
New Biotechnology, 33(3), 311-330
New Biotechnology 33 (2016) 3
New Biotechnology
New Biotechnology, 2016, 33 (3), pp.311-330. ⟨10.1016/j.nbt.2015.10.003⟩
New Biotechnology, 33(3), 311-330
New Biotechnology 33 (2016) 3
New Biotechnology
New Biotechnology, 2016, 33 (3), pp.311-330. ⟨10.1016/j.nbt.2015.10.003⟩
International audience; The REvolutionary Approaches and Devices for Nucleic Acid analysis (READNA) project received 12 million s funding under the European Union Framework Programme 7 from 1st June 2008 to 30th November 2012. The 19 project partners
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::affac657d3bbd8a193aed4cd37ca90f3
https://doi.org/10.1016/j.nbt.2015.10.003
https://doi.org/10.1016/j.nbt.2015.10.003