Approximating deformation fields for the analysis of continuous heterogeneity of biological macromolecules by 3D Zernike polynomials

Autor: David Herreros, Roy R. Lederman, James Krieger, Amaya Jiménez-Moreno, Marta Martínez, David Myška, David Strelak, Jiri Filipovic, Ivet Bahar, Jose Maria Carazo, Carlos Oscar S. Sanchez

Publikováno v: IUCrJ, Vol 8, Iss 6, Pp 992-1005 (2021)

Structural biology has evolved greatly due to the advances introduced in fields like electron microscopy. This image-capturing technique, combined with improved algorithms and current data processing software, allows the recovery of different conform

Externí odkaz: https://doaj.org/article/67b272f266e3477db975106481fc43d1

Advances in Xmipp for Cryo–Electron Microscopy: From Xmipp to Scipion

Autor: David Strelak, Amaya Jiménez-Moreno, José L. Vilas, Erney Ramírez-Aportela, Ruben Sánchez-García, David Maluenda, Javier Vargas, David Herreros, Estrella Fernández-Giménez, Federico P. de Isidro-Gómez, Jan Horacek, David Myska, Martin Horacek, Pablo Conesa, Yunior C. Fonseca-Reyna, Jorge Jiménez, Marta Martínez, Mohamad Harastani, Slavica Jonić, Jiri Filipovic, Roberto Marabini, José M. Carazo, Carlos O. S. Sorzano

Publikováno v: Molecules, Vol 26, Iss 20, p 6224 (2021)

Xmipp is an open-source software package consisting of multiple programs for processing data originating from electron microscopy and electron tomography, designed and managed by the Biocomputing Unit of the Spanish National Center for Biotechnology,

Externí odkaz: https://doaj.org/article/36f71b583c1c4f03baeab101350d4d9d

Approximating deformation fields for the analysis of continuous heterogeneity of biological macromolecules by 3D Zernike polynomials

Autor: Roy R. Lederman, Ivet Bahar, José María Carazo, David Myška, James Krieger, Marta Martínez, David Strelak, Jiri Filipovic, David Herreros, A. Jiménez-Moreno, Carlos Sierra Sánchez

Publikováno v: IUCrJ
IUCrJ, Vol 8, Iss 6, Pp 992-1005 (2021)

A new tool based on 3D Zernike polynomials is presented that allows the study of the continuous heterogeneity of biological macromolecules, revealing the structural relationships present among different states by the approximation of deformation fiel

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::560bca34c8b65c66a5eff4a0e47810db
http://europepmc.org/articles/PMC8562670

Cryo-EM and Single-Particle Analysis with Scipion

Autor: Yunior C. Fonseca, José María Carazo, E. Fernández-Giménez, Erney Ramírez-Aportela, Roberto Marabini, Pablo Conesa, Patricia Losana, L. del Cano, David Strelak, Jose Ramon Macias, David Maluenda, Ana Maria Cuervo, F. de Isidro-Gomez, Carlos Oscar S. Sorzano, María Jesús Martínez, A. Jiménez-Moreno, Rubén J. Sánchez-García, J. Jiménez de la Morena, David Herreros, Remedios Melero

Publikováno v: Biblos-e Archivo. Repositorio Institucional de la UAM
instname
Journal of Visualized Experiments

Cryo-electron microscopy has become one of the most important tools in biological research to reveal the structural information of macromolecules at near-atomic resolution. In single-particle analysis, the vitrified sample is imaged by an electron be

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::608eff6ea5fa1b71807d7aecb03df9f6
https://doi.org/10.3791/62261-v

Advances in xmipp for cryo-electron microscopy: From xmipp to scipion

Autor: Javier Vargas, Roberto Marabini, Erney Ramírez-Aportela, David Maluenda, Pablo Conesa, E. Fernández-Giménez, José María Carazo, Marta Martínez, David Strelak, Slavica Jonic, Rubén J. Sánchez-García, Jiri Filipovic, Carlos Oscar S. Sorzano, David Herreros, Jan Horáček, Federico P. de Isidro-Gómez, David Myška, José Luis Vilas, Mohamad Harastani, Jorge Jiménez, A. Jiménez-Moreno, Yunior C. Fonseca-Reyna, Martin Horacek

Publikováno v: Dipòsit Digital de la UB
Universidad de Barcelona
Molecules
Volume 26
Issue 20
Molecules, MDPI, 2021, 26 (20), pp.6224. ⟨10.3390/molecules26206224⟩
Molecules, Vol 26, Iss 6224, p 6224 (2021)
E-Prints Complutense. Archivo Institucional de la UCM
Universidad Europea (UEM)
Molecules, 2021, 26 (20), pp.6224. ⟨10.3390/molecules26206224⟩

International audience; Xmipp is an open-source software package consisting of multiple programs for processing data originating from electron microscopy and electron tomography, designed and managed by the Biocomputing Unit of the Spanish National C

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ea72fe9e86a8613e48ab78f45931861e
http://hdl.handle.net/2445/184043