Zobrazeno 1 - 10
of 121
pro vyhledávání: '"David Grunwald"'
Autor:
Stephanie Heinrich, Maria Hondele, Désirée Marchand, Carina Patrizia Derrer, Mostafa Zedan, Alexandra Oswald, Liliana Malinovska, Federico Uliana, Sarah Khawaja, Roberta Mancini, David Grunwald, Karsten Weis
Publikováno v:
Cell Reports, Vol 43, Iss 1, Pp 113593- (2024)
Summary: Nuclear mRNA export via nuclear pore complexes is an essential step in eukaryotic gene expression. Although factors involved in mRNA transport have been characterized, a comprehensive mechanistic understanding of this process and its regulat
Externí odkaz:
https://doaj.org/article/0f3d664a1d67456e919f84eb1b35c85e
Autor:
Carlas S. Smith, Karina Jouravleva, Maximiliaan Huisman, Samson M. Jolly, Phillip D. Zamore, David Grunwald
Publikováno v:
Nature Communications, Vol 10, Iss 1, Pp 1-9 (2019)
Analysis of single-molecule binding assays still requires substantial manual user intervention. Here, the authors present a pipeline for rapid, automated analysis of co-localization single-molecule spectroscopy images, with a modular user interface t
Externí odkaz:
https://doaj.org/article/843e839540ba4dd28ca6c75bbc68d526
Autor:
Maximiliaan Huisman, James J. Chambers, Alex Laude, Peter Bajcsy, Ulrike Boehm, Caterina Strambio-De-Castillia, Damir Sudar, Orestis Faklaris, Glyn Nelson, Mathias Hammer, Nathalie Gaudreault, Farzin Farzam, Carlas Smith, Claire M. Brown, Roland Nitschke, Alexander D. Corbett, Judith Lacoste, Jaime A. Pimentel, Alison J. North, Alessandro Rigano, David Grunwald
Publikováno v:
Nat Methods
1 -ABSTRACTDigital light microscopy provides powerful tools for quantitatively probing the real-time dynamics of subcellular structures. While the power of modern microscopy techniques is undeniable, rigorous record-keeping and quality control are re
Autor:
Aneasha F. Whittaker-Tademy, Mengyao Tan, Erez Lieberman Aiden, Hiroyuki Takeda, Bradley R. Cairns, Noelia Díaz, Neva C. Durand, Candice L. Wike, Dana Klatt Shaw, David Grunwald, Ryohei Nakamura, Yixuan Guo, Juan M. Vaquerizas
Publikováno v:
Genome Res
Chromatin architecture mapping in 3D formats has increased our understanding of how regulatory sequences and gene expression are connected and regulated in a genome. The 3D chromatin genome shows extensive remodeling during embryonic development, and
Autor:
Alessandro Rigano, Mathias Hammer, Joel Ryan, Claire M. Brown, David Grunwald, Caterina Strambio De Castillia
For quality, interpretation, reproducibility, and sharing value, microscopy images should be accompanied by detailed descriptions of the conditions that were used to produce them. Micro-Meta App is an intuitive, highly interoperable, open-source soft
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::d70b8f4726a8255133c5238980c7a799
https://doi.org/10.17504/protocols.io.36wgq7ddxvk5/v6
https://doi.org/10.17504/protocols.io.36wgq7ddxvk5/v6
Autor:
Nathalie Gaudreault, Steve Bagley, Rodrigo R Bammann, Fabio Barachati, Laszlo Barna, Veronika Boczonadi, Ulrike Boehm, Manel Bosch, Craig Brideau, Mariana T Carvalho, Pina Colarusso, Richard Cole, Nasser Darwish-Miranda, Sam Duwé, Frank Eismann, Orestis Faklaris, Andreas Felscher, Manfred Gonnert, David Grunwald, Marcel Kirchner, Birgit Hoffmann, Gabriel Krens, Alex J Laude, Jeffrey M LeDue, Pascal Lorentz, Miso Mitkovski, Michael S Nelson, Britta Schroth-Diez, Stanley Schwartz, Sathya Srinivasan, Roland Thuenauer, Tse-Luen Wee, Kees van der Oord, Chloë van Oostende-Triplet, Roland Nitschke, Laurent Gelman
To obtain accurate, reproducible, and interpretable data when conducting imaging experiments, it is critical to consider external factors affecting data acquisition at various steps of the experimental workflow. Illumination power and stability repre
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::304a8367a35c8ccb898d345c93d0a8b9
https://doi.org/10.17504/protocols.io.bzp8p5rw
https://doi.org/10.17504/protocols.io.bzp8p5rw
Autor:
James J. Chambers, Karl D. Bellve, Glyn Nelson, Claire M. Brown, Serkan Utku Öztürk, Willa Y. Ma, Jaime A. Pimentel, Orestis Faklaris, Michelle S. Itano, Mathias Hammer, Daniel P. Keeley, Marco Marcello, David Grunwald, Ulrike Boehm, Alessandro Rigano, Koray Kirli, Caterina Strambio-De-Castillia, Alexander Balashov, Alex Laude, Shannon Ehmsen, Judith Lacoste, Joel Ryan, Robert A. Coleman, Burak H. Alver, Stefanie Weidtkamp-Peters, Anna B Hamacher, Susanne Kunis, Roland Nitschke, Paula Montero-Llopis, Andrea Cosolo, Thomas Guilbert, Peter J. Park, Kevin E. Fogarty
Publikováno v:
Nature Methods
For quality, interpretation, reproducibility and sharing value, microscopy images should be accompanied by detailed descriptions of the conditions that were used to produce them. Micro-Meta App is an intuitive, highly interoperable, open-source softw
Autor:
Virginie Uhlmann, Jason R. Swedlow, David Grunwald, Ugis Sarkans, Peijun Zhang, Helen R. Saibil, Andrew W. Nicholls, Shuichi Onami, Cesare Catavitello, Ewan Birney, Jim Swoger, Jean-Karim Hériché, Perrine Paul-Gilloteaux, Frances Wong, Christopher Cawthorne, Maddy Parsons, Kedar Narayan, Josh Moore, Wah Chiu, Stephan Wagner-Conrad, Terry Meehan, Gerard J. Kleywegt, Michele C. Darrow, Gabriel G. Martins, Pasi Kankaanpää, Ardan Patwardhan, Caterina Strambio-De-Castillia, Omer Ali Bayraktar, Jan Ellenberg, Andrii Iudin, Elizabeth Duke, Nicholas James Sofroniew, Thomas Lemberger, Mary Barlow, Emmanuel Gustin, Paul Verkade, Maria Harkiolaki, Lenard M. Voortman, Jo McEntyre, Alvis Brazma, Nadine Utz, M. Romanchikova, Christian Tischer, Matthew R. G. Russell, Lucy M. Collinson, Helen Parkinson
Publikováno v:
Nat Methods
Nature Methods, 18, 1418-1422. NATURE RESEARCH
Nature Methods
Nature Methods, Nature Publishing Group, 2021, ⟨10.1038/s41592-021-01166-8⟩
Nature Methods, 2021, ⟨10.1038/s41592-021-01166-8⟩
et al. 2021, ' REMBI: Recommended Metadata for Biological Images : enabling reuse of microscopy data in biology ', Nature Methods, vol. 18, no. 12, pp. 1418-1422 . https://doi.org/10.1038/s41592-021-01166-8
Nature Methods, 18, 1418-1422. NATURE RESEARCH
Nature Methods
Nature Methods, Nature Publishing Group, 2021, ⟨10.1038/s41592-021-01166-8⟩
Nature Methods, 2021, ⟨10.1038/s41592-021-01166-8⟩
et al. 2021, ' REMBI: Recommended Metadata for Biological Images : enabling reuse of microscopy data in biology ', Nature Methods, vol. 18, no. 12, pp. 1418-1422 . https://doi.org/10.1038/s41592-021-01166-8
Bioimaging data have significant potential for reuse, but unlocking this potential requires systematic archiving of data and metadata in public databases. We propose draft metadata guidelines to begin addressing the needs of diverse communities withi
Autor:
Ardalan Naseri, Shaojie Zhang, Thoru Pederson, David Grunwald, Li-Chun Tu, Hanhui Ma, Yu-Chieh Chung
Publikováno v:
The Journal of Cell Biology
Ma et al. use the CRISPR-Sirius system to track the dynamics of genomic loci situated kilobases to megabases apart on a single chromosome throughout the cell cycle, providing insight into the compaction–relaxation dynamics of the interphase chromos
Autor:
Jiahao Liang, Jacob L. Capener, Kouki Kawakami, David Grunwald, Asuka Inoue, Jiewei Xu, Ruth Hüttenhain, Dana Klatt Shaw, John T. Happ, Ishan Deshpande, Isaac B. Nelson, Sara L. Stubben, Danielle S. Hedeen, Benjamin R. Myers, Aashish Manglik, Ju Fen Zhu, Nevan J. Krogan, Corvin D. Arveseth, Madison F. Walker
Publikováno v:
PLoS biology, vol 19, iss 4
PLoS Biology
PLoS Biology, Vol 19, Iss 4, p e3001191 (2021)
PLoS Biology
PLoS Biology, Vol 19, Iss 4, p e3001191 (2021)
The Hedgehog (Hh) pathway is essential for organ development, homeostasis, and regeneration. Dysfunction of this cascade drives several cancers. To control expression of pathway target genes, the G protein–coupled receptor (GPCR) Smoothened (SMO) a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::60d2a619f7ac028a3d571337cec82c2f
https://escholarship.org/uc/item/0w43z8d9
https://escholarship.org/uc/item/0w43z8d9