Zobrazeno 1 - 10
of 28
pro vyhledávání: '"David E Hufnagel"'
Autor:
Shichao Sun, Yumin Wang, He Wei, David E. Hufnagel, Ya Wang, Shiyu Guo, Yinghui Li, Li Wang, Li-juan Qiu
Publikováno v:
Crop Journal, Vol 11, Iss 2, Pp 523-530 (2023)
Soybean (Glycine max L.) is a protein and oil crop grown worldwide. Its fitness may be reduced by deleterious mutations, whose identification and purging is desirable for crop breeding. In the published whole-genome re-sequenced data of 2214 soybean
Externí odkaz:
https://doaj.org/article/a236f1cab49546b28733dc3fa29c62c2
Autor:
Rihong Jiang, Xinlian Chen, Xuezhu Liao, Dan Peng, Xiaoxu Han, Changsan Zhu, Ping Wang, David E. Hufnagel, Li Wang, Kaixiang Li, Cheng Li
Publikováno v:
Frontiers in Plant Science, Vol 13 (2022)
Camphor tree [Cinnamomum camphora (L.) J. Presl], a species in the magnoliid family Lauraceae, is known for its rich volatile oils and is used as a medical cardiotonic and as a scent in many perfumed hygiene products. Here, we present a high-quality
Externí odkaz:
https://doaj.org/article/a5a9c29724f24e43bddccdcffa6e3bdf
Publikováno v:
BMC Bioinformatics, Vol 21, Iss 1, Pp 1-11 (2020)
Abstract Background PacBio sequencing is an incredibly valuable third-generation DNA sequencing method due to very long read lengths, ability to detect methylated bases, and its real-time sequencing methodology. Yet, hitherto no tool was available fo
Externí odkaz:
https://doaj.org/article/009f82a3f464409a88d7b3e57533458d
Autor:
Shujun Ou, Jianing Liu, Kapeel M. Chougule, Arkarachai Fungtammasan, Arun S. Seetharam, Joshua C. Stein, Victor Llaca, Nancy Manchanda, Amanda M. Gilbert, Sharon Wei, Chen-Shan Chin, David E. Hufnagel, Sarah Pedersen, Samantha J. Snodgrass, Kevin Fengler, Margaret Woodhouse, Brian P. Walenz, Sergey Koren, Adam M. Phillippy, Brett T. Hannigan, R. Kelly Dawe, Candice N. Hirsch, Matthew B. Hufford, Doreen Ware
Publikováno v:
Nature Communications, Vol 11, Iss 1, Pp 1-10 (2020)
Sequence depth and read length determine the quality of genome assembly. Here, the authors leverage a set of PacBio reads to develop guidelines for sequencing and assembly of complex plant genomes in order to allocate finite resources using maize as
Externí odkaz:
https://doaj.org/article/9bfad55a4173428f8acffe7c51e13452
Autor:
Carine K. Souza, J. Brian Kimble, Tavis K. Anderson, Zebulun W. Arendsee, David E. Hufnagel, Katharine M. Young, Phillip C. Gauger, Nicola S. Lewis, C. Todd Davis, Sharmi Thor, Amy L. Vincent Baker
Publikováno v:
Viruses, Vol 15, Iss 2, p 331 (2023)
Human-to-swine transmission of influenza A (H3N2) virus occurs repeatedly and plays a critical role in swine influenza A virus (IAV) evolution and diversity. Human seasonal H3 IAVs were introduced from human-to-swine in the 1990s in the United States
Externí odkaz:
https://doaj.org/article/85dbc28a6a20476184328e203436facc
Autor:
J. Brian Kimble, Carine K. Souza, Tavis K. Anderson, Zebulun W. Arendsee, David E. Hufnagel, Katharine M. Young, Nicola S. Lewis, C. Todd Davis, Sharmi Thor, Amy L. Vincent Baker
Publikováno v:
Viruses, Vol 14, Iss 11, p 2398 (2022)
During the last decade, endemic swine H1 influenza A viruses (IAV) from six different genetic clades of the hemagglutinin gene caused zoonotic infections in humans. The majority of zoonotic events with swine IAV were restricted to a single case with
Externí odkaz:
https://doaj.org/article/9b97b281167f4b5580233c46fcfea28b
Autor:
David E Hufnagel, Katharine M Young, Zebulun W Arendsee, L Claire Gay, C Joaquin Caceres, Daniela S Rajão, Daniel R Perez, Amy L Vincent Baker, Tavis K Anderson
Publikováno v:
Virus Evol
Influenza A viruses (IAVs) of the H1N1 classical swine lineage became endemic in North American swine following the 1918 pandemic. Additional human-to-swine transmission events after 1918, and a spillover of H1 viruses from wild birds in Europe, pote
Autor:
David E. Hufnagel, Katharine M. Young, Zebulun Arendsee, L. Claire Gay, C. Joaquin Caceres, Daniela S. Rajão, Daniel R. Perez, Amy L. Vincent Baker, Tavis K. Anderson
Influenza A viruses (IAV) of the H1N1 classical swine lineage became endemic in North American swine following the 1918 pandemic. Additional human-to-swine transmission events after 1918, and a spillover of H1 viruses from wild birds in Europe, poten
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::9be3a12abf4a14bac2fd18187655889c
https://doi.org/10.1101/2022.11.18.517097
https://doi.org/10.1101/2022.11.18.517097
Autor:
J. Brian Kimble, Carine K. Souza, Tavis K. Anderson, Zebulun W. Arendsee, David E. Hufnagel, Katharine M. Young, Nicola S. Lewis, C. Todd Davis, Amy L. Vincent Baker
During the last decade, endemic swine H1 influenza A viruses (IAV) from six different genetic clades of the hemagglutinin gene caused zoonotic infections in humans. The majority of zoonotic events with swine IAV were restricted to a single case with
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::974b13ce62942c12d149ca617d621c8d
https://doi.org/10.1101/2022.09.12.507661
https://doi.org/10.1101/2022.09.12.507661
Autor:
R. Kelly Dawe, Jianing Liu, Kapeel Chougule, Adam M. Phillippy, Chen-Shan Chin, Sharon Wei, Brian P. Walenz, Sergey Koren, Samantha J. Snodgrass, Brett T. Hannigan, Joshua C. Stein, Arkarachai Fungtammasan, Nancy Manchanda, Arun S. Seetharam, Margaret R. Woodhouse, Kevin Fengler, Sarah Pedersen, Candice N. Hirsch, Shujun Ou, Matthew B. Hufford, Doreen Ware, Victor Llaca, Amanda M. Gilbert, David E. Hufnagel
Publikováno v:
Nature Communications, Vol 11, Iss 1, Pp 1-10 (2020)
Nature Communications
Nature Communications
Improvements in long-read data and scaffolding technologies have enabled rapid generation of reference-quality assemblies for complex genomes. Still, an assessment of critical sequence depth and read length is important for allocating limited resourc