Zobrazeno 1 - 10 of 6 683 pro vyhledávání: '"Database and informatics methods"'
1
Locating and activating molecular 'time bombs': induction of Mycolata prophages
Autor: Teagan L. Brown, Stephen R. Doyle, Joseph Tucci, Robert J. Seviour, Steve Petrovski, Zoe A. Dyson, Ben Farrar
Publikováno v: PLoS ONE, Vol 11, Iss 8, p e0159957 (2016)
PLoS ONE
Little is known about the prevalence, functionality and ecological roles of temperate phages for members of the mycolic acid producing bacteria, the Mycolata. While many lytic phages infective for these organisms have been isolated, and assessed for
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f0c5ac48599da6a2b77064438ba6c596
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2
The currency, completeness and quality of systematic reviews of acute management of moderate to severe traumatic brain injury: A comprehensive evidence map
Autor: Andrew I R Maas, David K. Menon, Carole Lunny, Russell L. Gruen, Loyal Pattuwage, Anneliese Synnot, Victor Volovici, Emma Donoghue, Ornella Clavisi, Peter Bragge, Maryse C. Cnossen, Stefania Mondello
Publikováno v: PLoS One (online), 13(6):e0198676. Public Library of Science
PLoS ONE, Vol 13, Iss 6, p e0198676 (2018)
PLoS ONE
ObjectiveTo appraise the currency, completeness and quality of evidence from systematic reviews (SRs) of acute management of moderate to severe traumatic brain injury (TBI).MethodsWe conducted comprehensive searches to March 2016 for published, Engli
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cb769263888823798a409a92d462c282
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3
HAYSTAC: A Bayesian framework for robust and rapid species identification in high-throughput sequencing data
Autor: Evangelos A. Dimopoulos, Alberto Carmagnini, Irina M. Velsko, Christina Warinner, Greger Larson, Laurent A. F. Frantz, Evan K. Irving-Pease
Publikováno v: PLoS Computational Biology
Dimopoulos, E A, Carmagnini, A, Velsko, I M, Warinner, C, Larson, G, Frantz, L A F & Irving-Pease, E K 2022, ' HAYSTAC : A Bayesian framework for robust and rapid species identification in high-throughput sequencing data ', PLOS Computational Biology, vol. 18, no. 9, e1010493 . https://doi.org/10.1371/journal.pcbi.1010493
Identification of specific species in metagenomic samples is critical for several key applications, yet many tools available require large computational power and are often prone to false positive identifications. Here we describe High-AccuracY and S
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::da35a59a7e2b740f06548aaa6c504bfa
https://hdl.handle.net/21.11116/0000-000C-BBB5-521.11116/0000-000C-BBB7-321.11116/0000-000C-BBB8-2
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4
Hierarchical structure and memory mechanisms in agreement attraction
Autor: Matthew Wagers, Julie Franck
Publikováno v: PLoS ONE
PLOS ONE, Vol. 15, No 5 (2020) P. e0232163
PLoS ONE, Vol 15, Iss 5, p e0232163 (2020)
Speakers occasionally produce verbs that agree with an element that is not the subject, a so-called 'attractor'; likewise, comprehenders occasionally fail to notice agreement errors when the verb agrees with the attractor. Cross-linguistic studies co
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9271a0c5add5cae05059a1971ac06154
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5
A scoping review of interventions to improve strength training participation
Autor: Jasmin K. Ma, Jennifer Leese, Stephanie Therrien, Alison M. Hoens, Karen Tsui, Linda C. Li
Publikováno v: PLoS ONE
PLoS ONE, Vol 17, Iss 2, p e0263218 (2022)
Background Low participation rates (1–31%) and unique barriers to strength training (e.g., specialized knowledge, equipment, perceived complexity) suggest effective strength training interventions may differ from effective aerobic or general physic
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dbca3102c84acb206671cd24714069fb
http://europepmc.org/articles/PMC8812857
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6
Examining linguistic shifts between preprints and publications
Autor: Nicholson, David N., Rubinetti, Vincent, Hu, Dongbo, Thielk, Marvin, Hunter, Lawrence E., Greene, Casey S.
Publikováno v: PLoS Biology
Preprints allow researchers to make their findings available to the scientific community before they have undergone peer review. Studies on preprints within bioRxiv have been largely focused on article metadata and how often these preprints are downl
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::e0c72aac6f57d73c2d9de1b22f798d1c
http://europepmc.org/articles/PMC8806061
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7
A systematic review on risk factors for khat chewing among adolescents in the African continent and Arabian Peninsula
Autor: Osman Abubakar Fiidow, Halimatus Sakdiah Minhat, Nor Afiah Mohd Zulkefli, Norliza Ahmad
Publikováno v: PLoS ONE
PLoS ONE, Vol 17, Iss 2, p e0263372 (2022)
Introduction Khat is a flowering plant with stimulant effect on the nervous system and produce psychological dependence. Despite its harmful effects, the ingestion of khat has been part of cultural norms and the legality of khat varies by region. Obj
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e874dcda034d74ed23be3c376220d431
http://europepmc.org/articles/PMC8812941
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8
Polypolish: Short-read polishing of long-read bacterial genome assemblies
Autor: Ryan Wick, Kathryn Holt
Publikováno v: PLoS Computational Biology, Vol 18, Iss 1, p e1009802 (2022)
PLoS Computational Biology
Long-read-only bacterial genome assemblies usually contain residual errors, most commonly homopolymer-length errors. Short-read polishing tools can use short reads to fix these errors, but most rely on short-read alignment which is unreliable in repe
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9
Single gene targeted nanopore sequencing enables simultaneous identification and antimicrobial resistance detection of sexually transmitted infections
Autor: Natalia Romero Sandoval, Andrea A. Lopez Rodas, Luz Marina Llangarí, Sadiq Tariq Sadiq, Liqing Zhou, Philip J. Cooper
Publikováno v: PLoS ONE, Vol 17, Iss 1, p e0262242 (2022)
PLoS ONE
PLoS ONE, Vol 17, Iss 1 (2022)
Objectives To develop a simple DNA sequencing test for simultaneous identification and antimicrobial resistance (AMR) detection of multiple sexually transmitted infections (STIs). Methods Real-time PCR (qPCR) was initially performed to identify Neiss
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::61e28072ad65d2243cda187645c0d8be
https://openaccess.sgul.ac.uk/id/eprint/114086/1/journal.pone.0262242.pdf
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10
Bringing bioinformatics to schools with the 4273pi project
Autor: Stevie A. Bain, Heleen Plaisier, Felicity Anderson, Nicola Cook, Kathryn Crouch, Thomas R. Meagher, Michael G. Ritchie, Edward W. J. Wallace, Daniel Barker
Publikováno v: PLoS Computational Biology
PLoS Computational Biology, Vol 18, Iss 1, p e1009705 (2022)
Bain, S, Plaisier, H, Anderson, F, Cook, N, Crouch, K, Meagher, T R, Ritchie, M, Wallace, E W J & Barker, D 2022, ' Bringing bioinformatics to schools with the 4273pi project ', PLoS Computational Biology, vol. 18, no. 1, e1009705 . https://doi.org/10.1371/journal.pcbi.1009705
The work was supported by the Science and Technology Facilities Council (STFC) under Grants STFC ST/R000328/1 (including salary to S.A.B., D.B., H.P., T.R.M. and non-salary costs) and STFC ST/T000872/1 (including salary to S.A.B., D.B., K.C., T.R.M.
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5065b193fe573ec1ad2b51aefbf473b3
https://hdl.handle.net/10023/24810
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