Zobrazeno 1 - 9
of 9
pro vyhledávání: '"Darryl Reeves"'
Autor:
Jeffrey A. Rosenfeld, Darryl Reeves, Mercer R. Brugler, Apurva Narechania, Sabrina Simon, Russell Durrett, Jonathan Foox, Kevin Shianna, Michael C. Schatz, Jorge Gandara, Ebrahim Afshinnekoo, Ernest T. Lam, Alex R. Hastie, Saki Chan, Han Cao, Michael Saghbini, Alex Kentsis, Paul J. Planet, Vladyslav Kholodovych, Michael Tessler, Richard Baker, Rob DeSalle, Louis N. Sorkin, Sergios-Orestis Kolokotronis, Mark E. Siddall, George Amato, Christopher E. Mason
Publikováno v:
Nature Communications, Vol 7, Iss 1, Pp 1-10 (2016)
The common bedbug is a pest for humans, yet its molecular biology is poorly understood. Here, the authors sequence the common bedbug genome and profile gene expression across all life stages to show major changes in gene expression after feeding on h
Externí odkaz:
https://doaj.org/article/9e90b05e34774654884e772c7b115e14
Autor:
Michael C. Schatz, Louis N. Sorkin, Mark E. Siddall, Michael Tessler, Alex Kentsis, Richard Baker, Saki Chan, Christopher E. Mason, Rob DeSalle, Paul J. Planet, Sabrina Simon, George Amato, Kevin Shianna, Mercer R. Brugler, Jeffrey A. Rosenfeld, Sergios-Orestis Kolokotronis, Vladyslav Kholodovych, Apurva Narechania, Ebrahim Afshinnekoo, Han Cao, Jorge Gandara, Russell E. Durrett, Alex Hastie, Michael Saghbini, Darryl Reeves, Ernest T. Lam, Jonathan Foox
Publikováno v:
Nature Communications, Vol 7, Iss 1, Pp 1-10 (2016)
Nature Communications 7 (2016)
Nature Communications
Nature Communications, 7
Nature Communications 7 (2016)
Nature Communications
Nature Communications, 7
The common bed bug (Cimex lectularius) has been a persistent pest of humans for thousands of years, yet the genetic basis of the bed bug's basic biology and adaptation to dense human environments is largely unknown. Here we report the assembly, annot
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9bd2e0116f43bdd54575a18654161649
https://doaj.org/article/9e90b05e34774654884e772c7b115e14
https://doaj.org/article/9e90b05e34774654884e772c7b115e14
Publikováno v:
Journal of Basic Microbiology. 54:315-321
Improvements in DNA sequencing technology provide unprecedented opportunities to explore fungal diversity, but also present challenges in data analysis due to the large number of sequences generated. Here, we describe an open source software program
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::c5756a0383477e47479adee71d592a71
https://doi.org/10.1002/jobm.201200507
https://doi.org/10.1002/jobm.201200507
Autor:
Joshua B. Benoit, Sergios-Orestis Kolokotronis, Michael A. Steffen, Louis N. Sorkin, Mark E. Siddall, Darryl Reeves, Apurva Narechania, Jeffrey A. Rosenfeld, Christopher E. Mason, Zoe Sakas, Jonathan Foox, Grant A Robison, Subba Reddy Palli, Rob DeSalle, George Amato, Stephen Richards, Mercer R. Brugler, Coby Schal, Richard Baker, Warren Booth
Publikováno v:
Mitochondrial DNA. Part B, Resources
article-version (VoR) Version of Record
article-version (VoR) Version of Record
We report the extraction of a bed bug mitogenome from high-throughput sequencing projects originally focused on the nuclear genome of Cimex lectularius. The assembled mitogenome has a similar AT nucleotide composition bias found in other insects. Phy
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::776d35434a52ab18206085c866460574
https://pubmed.ncbi.nlm.nih.gov/33473582
https://pubmed.ncbi.nlm.nih.gov/33473582
Autor:
Jeanne Garbarino, Katie Schneider Paolantonio, Julia M. Maritz, Sofia Ahsanuddin, Ebrahim Afshinnekoo, Joel T. Dudley, Yogesh Saletore, Shawn Levy, Sagar Chhangawala, Eric E. Schadt, Sergios-Orestis Kolokotronis, Tanzina Nawrin, Cem Meydan, Angela Jones, Nell Kirchberger, Ellen Jorgensen, Isaac Garcia, Shanin Chowdhury, Elizabeth Pereira, Collin Boyer, Darryl Reeves, Gregory D. O'Mullan, Scott Tighe, Paul Zumbo, Anya Dunaif, Jorge Gandara, Elizabeth Henaff, Eoghan O'Halloran, Braden E. Boone, Christopher E. Mason, Theodore R. Muth, Jane M. Carlton, Priyanka Vijay, Dyala Jaroudi, Sean Ennis, Nick Bernstein, Amber Simmons, Elizabeth Alter, Bharathi Sundaresh, Sean Dhanraj, Timothy Nessel, David Gandara, Noah Alexander, Michael Walsh, Tiago R. Magalhaes, Robert J. Prill
Publikováno v:
Cell Systems. 1(1):6-7
We appreciate the comments of Ackelsberg et al. (Ackelsberg et al., 2015xAckelsberg, J., Rakeman, J., Hughes, S., Peterson, J., Mead, P., Schriefer, M., Kingry, L., Hoffmaster, A., and Gee, J. Cell Syst. 2015; 1: 4–5Abstract | Full Text | Full Text
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4dae04d1179951d5d230345ee06e1d7e
Publikováno v:
Journal of basic microbiology. 54(4)
Improvements in DNA sequencing technology provide unprecedented opportunities to explore fungal diversity, but also present challenges in data analysis due to the large number of sequences generated. Here, we describe an open source software program
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::ce1187b9525ef30f9d18531f967fd5e3
https://pubmed.ncbi.nlm.nih.gov/23765392
https://pubmed.ncbi.nlm.nih.gov/23765392
Publikováno v:
BMC Bioinformatics
BioMed Central
BMC Bioinformatics, Vol 13, Iss 1, p 170 (2012)
BioMed Central
BMC Bioinformatics, Vol 13, Iss 1, p 170 (2012)
Background The k-mer hash length is a key factor affecting the output of de novo transcriptome assembly packages using de Bruijn graph algorithms. Assemblies constructed with varying single k-mer choices might result in the loss of unique contiguous
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::de1f9496eae038f904c98a4b3dde7b0c
https://pubmed.ncbi.nlm.nih.gov/22808927
https://pubmed.ncbi.nlm.nih.gov/22808927
Autor:
Darryl Reeves, Katelyn Michelini, Edward E Louis Jr., Páll Melsted, Webb Miller, Jonathan K. Pritchard, Aakrosh Ratan, George H. Perry, Yoav Gilad, Christopher E. Mason
Publikováno v:
Genome Biology and Evolution
We present a high-coverage draft genome assembly of the aye-aye (Daubentonia madagascariensis), a highly unusual nocturnal primate from Madagascar. Our assembly totals ~3.0 billion bp (3.0 Gb), roughly the size of the human genome, comprised of ~2.6
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d16bb1a7c40fa73abc9e65b8d56655b0
https://pubmed.ncbi.nlm.nih.gov/22155688
https://pubmed.ncbi.nlm.nih.gov/22155688
Autor:
Sergios-Orestis Kolokotronis, Timothy Nessel, Elizabeth Henaff, David Gandara, Noah Alexander, Angela Jones, Sean Ennis, Nell Kirchberger, Shanin Chowdhury, Jeanne Garbarino, Isaac Garcia, Darryl Reeves, Michael Walsh, Tanzina Nawrin, Cem Meydan, Jorge Gandara, Amber Simmons, Sofia Ahsanuddin, Shawn Levy, Elizabeth Alter, Jane M. Carlton, Collin Boyer, Nick Bernstein, Ebrahim Afshinnekoo, Joel T. Dudley, Tiago R. Magalhaes, Braden E. Boone, Bharathi Sundaresh, Eric E. Schadt, Sean Dhanraj, Robert J. Prill, Scott Tighe, Gregory D. O'Mullan, Paul Zumbo, Ellen Jorgensen, Elizabeth Pereira, Katie Schneider Paolantonio, Priyanka Vijay, Dyala Jaroudi, Julia M. Maritz, Anya Dunaif, Christopher E. Mason, Theodore R. Muth, Yogesh Saletore, Eoghan O'Halloran, Sagar Chhangawala
Publikováno v:
Cell systems
SUMMARY The panoply of microorganisms and other species present in our environment influence human health and disease, especially in cities, but have not been profiled with metagenomics at a city-wide scale. We sequenced DNA from surfaces across the
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::25843c5c192b6aaaec7fcddfffad4133