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pro vyhledávání: '"Darling Aaron E"'
Bayesian inference for phylogenetics is a gold standard for computing distributions of phylogenies. It faces the challenging problem of. moving throughout the high-dimensional space of trees. However, hyperbolic space offers a low dimensional represe
Externí odkaz:
http://arxiv.org/abs/2206.08044
Publikováno v:
BMC Bioinformatics, Vol 12, Iss Suppl 9, p S1 (2011)
Abstract Background During evolution, large-scale genome rearrangements of chromosomes shuffle the order of homologous genome sequences ("synteny blocks") across species. Some years ago, a controversy erupted in genome rearrangement studies over whet
Externí odkaz:
https://doaj.org/article/33cd5cffd95c477d965dd02e9d4d71ea
Publikováno v:
BMC Genomics, Vol 13, Iss 1, p 256 (2012)
Abstract Background Escherichia coli is an important species of bacteria that can live as a harmless inhabitant of the guts of many animals, as a pathogen causing life-threatening conditions or freely in the non-host environment. This diversity of li
Externí odkaz:
https://doaj.org/article/a3a072b5c53c4ac48dac6a669fbf2772
Phylogenetics, the inference of evolutionary trees from molecular sequence data such as DNA, is an enterprise that yields valuable evolutionary understanding of many biological systems. Bayesian phylogenetic algorithms, which approximate a posterior
Externí odkaz:
http://arxiv.org/abs/1610.08148
Akademický článek
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Akademický článek
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Motivation: Open-source bacterial genome assembly remains inaccessible to many biologists due to its complexity. Few software solutions exist that are capable of automating all steps in the process of de novo genome assembly from Illumina data. Resul
Externí odkaz:
http://arxiv.org/abs/1401.5130
Autor:
Ayres, Daniel L., Cummings, Michael P., Baele, Guy, Darling, Aaron E., Lewis, Paul O., Swofford, David L., Huelsenbeck, John P., Lemey, Philippe, Rambaut, Andrew, Suchard, Marc A.
Publikováno v:
Systematic Biology, 2019 Nov 01. 68(6), 1052-1061.
Externí odkaz:
https://www.jstor.org/stable/26842021
Publikováno v:
WABI 2012, LNBI 7534:391-403 (2012)
During the course of evolution, an organism's genome can undergo changes that affect the large-scale structure of the genome. These changes include gene gain, loss, duplication, chromosome fusion, fission, and rearrangement. When gene gain and loss o
Externí odkaz:
http://arxiv.org/abs/1207.6964
Multiple genome alignment remains a challenging problem. Effects of recombination including rearrangement, segmental duplication, gain, and loss can create a mosaic pattern of homology even among closely related organisms. We describe a method to ali
Externí odkaz:
http://arxiv.org/abs/0910.5780