Zobrazeno 1 - 10
of 96
pro vyhledávání: '"Darling, AE"'
Using a previously described metagenomics dataset of 27 billion reads, we reconstructed over 50 000 metagenome-assembled genomes (MAGs) of organisms resident in the porcine gut, 46.5 % of which were classified as >70 % complete with a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=od_______363::8bcf6bb834e8f327401e665a42b052c0
https://hdl.handle.net/10453/152716
https://hdl.handle.net/10453/152716
Autor:
Hastak P, Fourment M, Darling AE, Gottlieb T, Cheong E, Merlino J, Myers GSA, Djordjevic SP, Chowdhury PR
The H30Rx subclade of Escherichia coli ST131 is a clinically important, globally dispersed extra-pathogenic lineage that typically displays resistance to fluoroquinolones and extended spectrum ß-lactams. Here we describe isolates EC233 and EC234, bo
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=od_______363::334a74e0b9928d82edfa3bbfac2f21dd
https://hdl.handle.net/10453/142066
https://hdl.handle.net/10453/142066
Autor:
Roy Chowdhury, P, Fourment, M, DeMaere, MZ, Monahan, L, Merlino, J, Gottlieb, T, Darling, AE, Djordjevic, SP
© 2019 Elsevier Inc. IncHI2-ST1 plasmids play an important role in co-mobilizing genes conferring resistance to critically important antibiotics and heavy metals. Here we present the identification and analysis of IncHI2-ST1 plasmid pSPRC-Echo1, iso
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=od_______363::63e1899936e1edd5896c94cf1c1b02eb
https://hdl.handle.net/10453/133813
https://hdl.handle.net/10453/133813
Autor:
Darling, AE, Fourment, M
Modern infectious disease outbreak surveillance produces continuous streams of sequence data which require phylogenetic analysis as data arrives. Current software packages for Bayesian phylogenetic inference are unable to quickly incorporate new sequ
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=od_______363::bc8f099e64aa93c8b952f702219d3478
https://hdl.handle.net/10453/116143
https://hdl.handle.net/10453/116143
Autor:
Darling, AE
In metagenome analysis, computational methods for assembly, taxonomic profiling and binning are key components facilitating downstream biological data interpretation. However, a lack of consensus about benchmarking datasets and evaluation metrics com
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=od_______363::8b4fcb129e26b3d21416673274e1b924
https://hdl.handle.net/10453/115591
https://hdl.handle.net/10453/115591
Autor:
DeMaere, MZ, Darling, AE
© 2016 DeMaere and Darling. Background. Chromosome conformation capture, coupled with high throughputDNA sequencing in protocols like Hi-C and 3C-seq, has been proposed as a viable means of generating data to resolve the genomes of microorganisms li
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=od_______363::33cd588e9913174660273169b3f9513e
https://hdl.handle.net/10453/65026
https://hdl.handle.net/10453/65026
Publikováno v:
Lo, JR; Lang, JM; Darling, AE; Eisen, JA; & Coil, DA. (2013). Draft genome sequence of an actinobacterium, Brachybacterium muris strain UCD-AY4. Genome Announcements, 1(2). doi: 10.1128/genomeA.00086-13. UC Davis: Retrieved from: http://www.escholarship.org/uc/item/694631r0
© 2013 Lo et al. Here we present the draft genome of an actinobacterium, Brachybacterium muris UCD-AY4. The assembly contains 3,257,338 bp and has a GC content of 70%. This strain was isolated from a residential bath towel and has a 16S rRNA gene 99
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=od_______325::ca7cc3cf457a99e0e60273fc5aa29de9
http://www.escholarship.org/uc/item/694631r0
http://www.escholarship.org/uc/item/694631r0
© 2013 Holland-Moritz et al. Here we present the draft genome of Leucobacter sp. strain UCD-THU. The genome contains 3,317,267 bp in 11 scaffolds. This strain was isolated from a residential toilet as part of an undergraduate project to sequence ref
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=od_______363::1c7fd93f668443b702a1a98315687427
https://hdl.handle.net/10453/116100
https://hdl.handle.net/10453/116100
© 2013 Coil et al. Here, we present the draft genome of Kocuria sp. strain UCD-OTCP, a member of the phylum Actinobacteria, isolated from a restaurant chair cushion. The assembly contains 3,791,485 bp (G+C content of 73%) and is contained in 68 scaf
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=od_______363::6e75a4efde66fc9be0905309669a9c68
https://hdl.handle.net/10453/36881
https://hdl.handle.net/10453/36881
© 2013 Diep et al. Here, we present the draft genome sequence of an actinobacterium, Dietzia sp. strain UCD-THP, isolated from a residential toilet handle. The assembly contains 3,915,613 bp. The genome sequences of only two other Dietzia species ha
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=od_______363::2f274ad1ee06f6f132f0fd13b362a36b
https://hdl.handle.net/10453/115801
https://hdl.handle.net/10453/115801