Zobrazeno 1 - 10
of 12
pro vyhledávání: '"Darien Yeung"'
Publikováno v:
Computational and Structural Biotechnology Journal, Vol 21, Iss , Pp 2446-2453 (2023)
Peptide retention time (RT) prediction algorithms are tools to study and identify the physicochemical properties that drive the peptide-sorbent interaction. Traditional RT algorithms use multiple linear regression with manually curated parameters to
Externí odkaz:
https://doaj.org/article/27173e3595d34ec496124f6ef3f9257e
Autor:
Benilde Mizero, Ying Lao, Daniel Gussakovsky, Victor Spicer, Oleg V. Krokhin, Darien Yeung, Nicole Klaassen
Publikováno v:
Analytical Chemistry. 92:3904-3912
Peptide separation orthogonality for 16 different 2D LC-ESI MS systems has been evaluated. To compare and contrast the behavior of the first dimension columns, a large proteomic retention data set of ∼30 000 tryptic peptides was collected for each
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7e8cfc7d76b434e3b4661e1ac3ade73a
https://doi.org/10.1021/acs.analchem.9b05407
https://doi.org/10.1021/acs.analchem.9b05407
Publikováno v:
Journal of Chromatography A. 1679:463391
Reversed-phase (RP) HPLC separation of peptides labeled with amine-reacting tags for relative protein quantitation (iTRAQ4, iTRAQ8 - isobaric tag for relative and absolute quantitation, TMT - tandem mass tag) has been investigated using large-scale p
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d06b3ad44aa40c5ecda2a1ef67e054a7
https://doi.org/10.1016/j.chroma.2022.463391
https://doi.org/10.1016/j.chroma.2022.463391
Autor:
Chih-Hsiang Chang, Kosuke Ogata, Victor Spicer, Oleg V. Krokhin, Yasushi Ishihama, Darien Yeung
Publikováno v:
Journal of proteome research.
The contribution of peptide amino acid sequence to collision cross section values (CCS) has been investigated using a dataset of ∼134 000 peptides of four different charge states (1+ to 4+). The migration data were acquired using a two-dimensional
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8639a4141a46593f39d76180d556dd19
https://pubmed.ncbi.nlm.nih.gov/34133192
https://pubmed.ncbi.nlm.nih.gov/34133192
The contribution of peptide amino-acid sequence to collision cross-section values (CCS) has been investigated using a dataset of ∼134,000 peptides of four different charge states (1+ to 4+). The migration data was acquired using a two-dimensional L
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::7dd76e7416886f0a500b1a8b3f14d2f9
https://doi.org/10.1101/2020.09.14.296590
https://doi.org/10.1101/2020.09.14.296590
Publikováno v:
Journal of Chromatography A. 1657:462584
Development of a peptide retention prediction model in reversed-phase chromatography is reported for acetylated peptides – both N-terminal (α-) and side chain of Lys (e-amine) residues. Large-scale proteomic 2D LC-MS analyses of acetylated/non-ace
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::fa618553decb5df57df82eda1e525f7b
https://doi.org/10.1016/j.chroma.2021.462584
https://doi.org/10.1016/j.chroma.2021.462584
Publikováno v:
Journal of chemical information and modeling. 59(4)
Mass spectrometric data are copious and generate a processing burden that is best dealt with programmatically. PythoMS is a collection of tools based on the Python programming language that assist researchers in creating figures and video output that
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0201bf1102e4fe7490d90f85d627fb1d
https://pubmed.ncbi.nlm.nih.gov/30932490
https://pubmed.ncbi.nlm.nih.gov/30932490
Publikováno v:
Journal of Chromatography A. 1619:460909
Peptide retention time prediction models have been developed for zwitter-ionic ZIC-HILIC and ZIC-cHILIC stationary phases (pH 4.5 eluents) using proteomics-derived retention datasets of ~30 thousand tryptic peptides each. Overall, hydrophilicity of t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b64785c3791d11a348328e6b5f414ee9
https://doi.org/10.1016/j.chroma.2020.460909
https://doi.org/10.1016/j.chroma.2020.460909
Mass spectrometric data are copious and generate a processing burden that is best dealt with programmatically. PythoMS is a collection of tools based on the Python programming language that assist researchers in creating figures and video output that
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::84c3205ad464d32e75d11046d796601b
https://doi.org/10.26434/chemrxiv.7264175.v1
https://doi.org/10.26434/chemrxiv.7264175.v1
Publikováno v:
Inorganic chemistry. 57(1)
Reduction of red Cp2TiCl2 (Cp = cyclopentadienyl) with zinc dust in acetonitrile produces a blue solution of [Cp2Ti(NCMe)2]+, which when exposed to air rapidly discolors to bright yellow. This behavior makes the blue solution a handy visual indicator
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8544ec2b28ce78e914761f494b081c84
https://pubmed.ncbi.nlm.nih.gov/29219302
https://pubmed.ncbi.nlm.nih.gov/29219302