Zobrazeno 1 - 10
of 60
pro vyhledávání: '"Dannie Durand"'
Publikováno v:
PLoS Genetics, Vol 14, Iss 9, p e1007470 (2018)
The evolution of signal transduction pathways is constrained by the requirements of signal fidelity, yet flexibility is necessary to allow pathway remodeling in response to environmental challenges. A detailed understanding of how flexibility and con
Externí odkaz:
https://doaj.org/article/31a023f3d6dd466cb861dbc777d51541
Autor:
Irena Antic, Kimberly M. Brothers, Maureen Stolzer, Han Lai, Evan Powell, Rory Eutsey, Rolando A. Cuevas, Xinyu Miao, Regis P. Kowalski, Robert M. Q. Shanks, Dannie Durand, N. Luisa Hiller
Publikováno v:
mSphere, Vol 2, Iss 5 (2017)
ABSTRACT Streptococcus pneumoniae (pneumococcus) displays broad tissue tropism and infects multiple body sites in the human host. However, infections of the conjunctiva are limited to strains within a distinct phyletic group with multilocus sequence
Externí odkaz:
https://doaj.org/article/01beb50ab4f44666ad77049bc03a0bf2
Publikováno v:
PLoS Computational Biology, Vol 4, Iss 4, p e1000063 (2008)
We address the problem of homology identification in complex multidomain families with varied domain architectures. The challenge is to distinguish sequence pairs that share common ancestry from pairs that share an inserted domain but are otherwise u
Externí odkaz:
https://doaj.org/article/5433c55b2cce4fa8bb4eee4464b29ee7
Publikováno v:
Journal of Cell Biology. 222
Homotypic membrane fusion catalyzed by the atlastin (ATL) GTPase sustains the branched endoplasmic reticulum (ER) network in metazoans. Our recent discovery that two of the three human ATL paralogs (ATL1/2) are C-terminally autoinhibited implied that
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::76a1aadaf83132f93e24454f001eeb8b
https://doi.org/10.1083/jcb.202211021
https://doi.org/10.1083/jcb.202211021
Publikováno v:
Journal of bioinformatics and computational biology. 19(6)
The exon shuffling theory posits that intronic recombination creates new domain combinations, facilitating the evolution of novel protein function. This theory predicts that introns will be preferentially situated near domain boundaries. Many studies
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5159089d45f570b36bb50b9becb290d3
https://pubmed.ncbi.nlm.nih.gov/34806953
https://pubmed.ncbi.nlm.nih.gov/34806953
Publikováno v:
Nucleic Acids Research
Highly Iterated Palindrome 1 (HIP1, GCGATCGC) is hyper-abundant in most cyanobacterial genomes. In some cyanobacteria, average HIP1 abundance exceeds one motif per gene. Such high abundance suggests a significant role in cyanobacterial biology. Howev
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5cc772a477b94c236286230280a55826
https://doi.org/10.1093/nar/gky075
https://doi.org/10.1093/nar/gky075
Autor:
Lingling Jin, Dannie Durand
This book constitutes the refereed proceedings of the 19th Annual RECOMB Satellite Workshop on Comparative Genomics, RECOMB-CG which took place in La Jolla, USA, during May 20-21, 2022. The 18 full papers included in this book were carefully reviewe
Autor:
Dessimoz, Christophe, Gabaldón, Toni, Roos, David S., Sonnhammer, Erik L. L., Herrero, Javier, Altenhoff, Adrian, Apweiler, Rolf, Ashburner, Michael, Blake, Judith, Boeckmann, Brigitte, Bridge, Alan, Bruford, Elspeth, Cherry, Mike, Conte, Matthieu, Dannie, Durand, Datta, Ruchira, Domelevo Entfellner, Jean-Baka, Ebersberger, Ingo, Galperin, Michael, Joseph, Jacob, Koestler, Tina, Kriventseva, Evgenia, Lecompte, Odile, Leunissen, Jack, Lewis, Suzanna, Linard, Benjamin, Livstone, Michael S., Lu, Hui-Chun, Martin, Maria, Mazumder, Raja, Messina, David, Miele, Vincent, Muffato, Matthieu, Perrière, Guy, Punta, Marco, Roos, David, Rouard, Mathieu, Schmitt, Thomas, Schreiber, Fabian, Silva, Alan, Sjölander, Kimmen, Škunca, Nives, Sonnhammer, Erik, Stanley, Eleanor, Szklarczyk, Radek, Thomas, Paul, Uchiyama, Ikuo, Van Bel, Michiel, Vandepoele, Klaas, Vilella, Albert J., Yates, Andrew, Zdobnov, Evgeny
The identification of orthologs—genes pairs descended from a common ancestor through speciation, rather than duplication—has emerged as an essential component of many bioinformatics applications, ranging from the annotation of new genomes to expe
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=od_______805::4f608a3fc549ac0ff0ce1f7e7d39e199
http://doc.rero.ch/record/292993/files/bts050.pdf
http://doc.rero.ch/record/292993/files/bts050.pdf
Publikováno v:
Comparative Genomics ISBN: 9783319679785
RECOMB-CG
RECOMB-CG
Weak branch supports in a gene tree suggest that the signal in sequence data is insufficient to resolve a particular branching order. One approach to reduce uncertainty takes the topology of the species tree into account. Under a maximum parsimony mo
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::2ec82f82a20137c7d9ec2d4b7dddf05a
https://doi.org/10.1007/978-3-319-67979-2_16
https://doi.org/10.1007/978-3-319-67979-2_16
Autor:
Dannie Durand
Publikováno v:
The Quarterly Review of Biology. 93:165-166
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::427a9565d5b7da9abd6a5a4d92303edf
https://doi.org/10.1086/698085
https://doi.org/10.1086/698085