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pro vyhledávání: '"Danko, David C."'
Autor:
Danko, David C., Golden, James, Vorosmarty, Charles, Cak, Anthony, Corsi, Fabio, Mason, Christopher E., Maciel-de-Freitas, Rafael, Nagy-Szakal, Dorottya, OHara, Niamh B.
The COVID-19 pandemic revealed that global health, social systems, and economies can be surprisingly fragile in an increasingly interconnected and interdependent world. Yet, during the last half of 2022, and quite remarkably, we began dismantling ess
Externí odkaz:
http://arxiv.org/abs/2302.00863
Autor:
Danko, David C, Mason, Chris
Motivation: Accurate data analysis and quality control is critical for metagenomic studies. Though many tools exist to analyze metagenomic data there is no consistent framework to integrate and run these tools across projects. Currently, computationa
Externí odkaz:
http://arxiv.org/abs/2009.12338
Autor:
Park, Jiwoon, Foox, Jonathan, Hether, Tyler, Danko, David C., Warren, Sarah, Kim, Youngmi, Reeves, Jason, Butler, Daniel J., Mozsary, Christopher, Rosiene, Joel, Shaiber, Alon, Afshin, Evan E., MacKay, Matthew, Rendeiro, André F., Bram, Yaron, Chandar, Vasuretha, Geiger, Heather, Craney, Arryn, Velu, Priya, Melnick, Ari M., Hajirasouliha, Iman, Beheshti, Afshin, Taylor, Deanne, Saravia-Butler, Amanda, Singh, Urminder, Wurtele, Eve Syrkin, Schisler, Jonathan, Fennessey, Samantha, Corvelo, André, Zody, Michael C., Germer, Soren, Salvatore, Steven, Levy, Shawn, Wu, Shixiu, Tatonetti, Nicholas P., Shapira, Sagi, Salvatore, Mirella, Westblade, Lars F., Cushing, Melissa, Rennert, Hanna, Kriegel, Alison J., Elemento, Olivier, Imielinski, Marcin, Rice, Charles M., Borczuk, Alain C., Meydan, Cem, Schwartz, Robert E., Mason, Christopher E.
Publikováno v:
In Cell Reports Medicine 15 February 2022 3(2)
Akademický článek
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Akademický článek
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Autor:
Danko, David C., Sierra, Maria A., Benardini, James N., Guan, Lisa, Wood, Jason M., Nitin Singh, Seuylemezian, Arman, Butler, Daniel J., Ryon, Krista, Kuchin, Katerina, Meleshko, Dmitry, Bhattacharya, Chandrima, Kasthuri J. Venkateswaran, Mason, Christopher E.
Additional file 8: Figure S7. Prevalence of species in different categories. Heatmap showing the prevalence (fraction of samples where a taxon is detected) of different taxa across categories. Too many taxa are present to individually name taxa.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::c7ebf88b8ab6d57c213bfda2c78a2060
Autor:
Danko, David C., Sierra, Maria A., Benardini, James N., Guan, Lisa, Wood, Jason M., Nitin Singh, Seuylemezian, Arman, Butler, Daniel J., Ryon, Krista, Kuchin, Katerina, Meleshko, Dmitry, Bhattacharya, Chandrima, Kasthuri J. Venkateswaran, Mason, Christopher E.
Additional file 6: Figure S5. Rarefaction Analysis. The number of unique species detected in multiple samples of the same type. A) Sample sets appear to reach a maximum suggesting that the majority of species have been fully categorized in each categ
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::33c3dc5f6da4e2ef3de8ef72ad1220f5
Autor:
Danko, David C., Sierra, Maria A., Benardini, James N., Guan, Lisa, Wood, Jason M., Nitin Singh, Seuylemezian, Arman, Butler, Daniel J., Ryon, Krista, Kuchin, Katerina, Meleshko, Dmitry, Bhattacharya, Chandrima, Kasthuri J. Venkateswaran, Mason, Christopher E.
Additional file of A comprehensive metagenomics framework to characterize organisms relevant for planetary protection
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::fa8698e0f22891dd7544e8880f878df0
Autor:
Danko, David C., Sierra, Maria A., Benardini, James N., Guan, Lisa, Wood, Jason M., Nitin Singh, Seuylemezian, Arman, Butler, Daniel J., Ryon, Krista, Kuchin, Katerina, Meleshko, Dmitry, Bhattacharya, Chandrima, Kasthuri J. Venkateswaran, Mason, Christopher E.
Additional file 1: Table S1. Sample Sets and Categories for JPL Planetary Protection Testing
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1bdb6ab1472bdd5bc441db0910803d88
Autor:
Danko, David C., Sierra, Maria A., Benardini, James N., Guan, Lisa, Wood, Jason M., Nitin Singh, Seuylemezian, Arman, Butler, Daniel J., Ryon, Krista, Kuchin, Katerina, Meleshko, Dmitry, Bhattacharya, Chandrima, Kasthuri J. Venkateswaran, Mason, Christopher E.
Additional file 4: Figure S3. Comparison of QC Metrics in cases to controls. We detected 24 species across all control samples after initial filtering. Environmental metagenomic samples are qualitatively similar to samples of laboratory contamination
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::20d78a62d0f834dd0e0417c6ef6fd669