Zobrazeno 1 - 10
of 10
pro vyhledávání: '"Daniel T Zuch"'
Autor:
Dakota Y Hawkins, Daniel T Zuch, James Huth, Nahomie Rodriguez-Sastre, Kelley R McCutcheon, Abigail Glick, Alexandra T Lion, Christopher F Thomas, Abigail E Descoteaux, William Evan Johnson, Cynthia A Bradham
Publikováno v:
Bioinformatics. 39
Motivation The detection of distinct cellular identities is central to the analysis of single-cell RNA sequencing (scRNA-seq) experiments. However, in perturbation experiments, current methods typically fail to correctly match cell states between con
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::ce6fda8aaad934b4ce321c929708d3e1
https://doi.org/10.1093/bioinformatics/btad278
https://doi.org/10.1093/bioinformatics/btad278
The larval skeleton of the sea urchinLytechinus variegatusis an ideal model system for studying skeletal patterning; however, our understanding of the etiology of skeletal patterning in sea urchin larvae is limited due to the lack of approaches to li
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dda90962f9ba1f002d713eadd6a68db4
https://doi.org/10.1101/2022.12.12.520085
https://doi.org/10.1101/2022.12.12.520085
Autor:
Stéphanie Robert, Richard S. Smith, Siamsa M. Doyle, Mateusz Majda, Daniel T Zuch, Keiko U. Torii
Publikováno v:
Plant Cell
As the outermost layer of plants, the epidermis serves as a critical interface between plants and the environment. During leaf development, the differentiation of specialized epidermal cell types, including stomatal guard cells, pavement cells, and t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::80c9e5018d342b96edd88eb581cb2bec
https://doi.org/10.1093/plcell/koab250
https://doi.org/10.1093/plcell/koab250
Publikováno v:
Plantcell physiology.
Plants develop in the absence of cell migration. As such, cell division and differentiation need to be coordinated for functional tissue formation. Cellular valves on the plant epidermis, stomata, are generated through a stereotypical sequence of cel
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::35aff60440d32d01730a6e3a905c99e0
https://pubmed.ncbi.nlm.nih.gov/36609867
https://pubmed.ncbi.nlm.nih.gov/36609867
Autor:
Dakota Y. Hawkins, Daniel T. Zuch, James Huth, Nahomie Rodriguez-Sastre, Kelley R. McCutcheon, Abigail Glick, Alexandra T. Lion, Christopher F. Thomas, Abigail E. Descoteaux, W. Evan Johnson, Cynthia A. Bradham
MotivationThe detection of distinct cellular identities is central to the analysis of single-cell RNA sequencing experiments. However, in perturbation experiments, current methods typically fail to correctly match cell states between conditions or er
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::66344946f455227c24dd089209e4e43b
https://doi.org/10.1101/2022.05.26.493603
https://doi.org/10.1101/2022.05.26.493603
Autor:
Shweta Paresh Kitchloo, Luz Dojer, Cynthia A. Bradham, Daphne Schatzberg, Christopher F. Thomas, Sarah E. Hadyniak, Patrick Reidy, Viktoriya Skidanova, Daniel T. Zuch, Matthew L. Lawton
The mechanism for embryonic dorsal-ventral (DV) symmetry breaking is idiosyncratic to the species, then converges on polarized expression of BMP signaling ligands. Here, we show that V-ATPase (VHA) activity is an early requirement for DV symmetry bre
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::f2484eb1d3717a71746b56645b6a739c
https://doi.org/10.1101/2021.10.18.464707
https://doi.org/10.1101/2021.10.18.464707
Autor:
Daniel T, Zuch, Cynthia A, Bradham
Publikováno v:
Methods in cell biology. 151
During sea urchin embryogenesis, primary mesenchyme cells (PMCs) follow a stereotypical migratory program, arrange into a primary pattern, then begin to secrete a bilaterally symmetric calcium carbonate skeleton. Recently identified genes are express
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::5f3c134192b687c9fad18ff557c574bd
https://pubmed.ncbi.nlm.nih.gov/30948024
https://pubmed.ncbi.nlm.nih.gov/30948024
Autor:
Daniel T. Zuch, John D. Hogan, Jonas Ibn-Salem, Miguel A. Andrade-Navarro, Bernd Timmermann, Lingqi Luo, Cynthia A. Bradham, Daphne Schatzberg, Jessica L. Keenan, Naoki Irie, Albert J. Poustka, José Horacio Grau, Dakota Y. Hawkins, Amanda B. Core, Carolyn Blumberg, Emily Speranza, Arjun Lamba, Michael L. Piacentino
Publikováno v:
bioRxiv
Developmental Biology
Developmental Biology
Embryonic development is arguably the most complex process an organism undergoes during its lifetime, and understanding this complexity is best approached with a systems-level perspective. The sea urchin has become a highly valuable model organism fo
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5ee7b9ba73ded6efba4e3292e8c47f49
Autor:
Cynthia A. Bradham, Oliver Chung, Michael L. Piacentino, Evan A. Conaway, Jia Yu, Janani Ramachandran, Arlene Reyna, Daniel T. Zuch
Publikováno v:
Developmental biology. 412(1)
Skeletal patterning in the sea urchin embryo requires coordinated signaling between the pattern-dictating ectoderm and the skeletogenic primary mesenchyme cells (PMCs); recent studies have begun to uncover the molecular basis for this process. Using
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c677922a247c8d5cbc68831f565e85d9
https://pubmed.ncbi.nlm.nih.gov/26905309
https://pubmed.ncbi.nlm.nih.gov/26905309
Autor:
James Chaves, Jia Yu, Daniel T. Zuch, Hajerah Hameeduddin, Evan S. Bardot, Arlene Reyna, John D. Hogan, Oliver Chung, Jasmin Coulombe-Huntington, Lingqi Luo, Patrick Ferrell, Sviatlana Rose, Todd A. Blute, Finnegan B. Hewitt, Albert J. Poustka, Ekaterina Oleinik, Amanda B. Core, Jonas Ibn-Salem, Christy Li, Vijeta Patel, Michael L. Piacentino, Janani Ramachandran, Emily Speranza, Cynthia A. Bradham, David Lee, Julie Fishman, Jessica L. Keenan
Publikováno v:
Development (Cambridge, England). 143(4)
The sea urchin larval skeleton offers a simple model for developmental pattern formation. The calcium carbonate skeleton is secreted by primary mesenchyme cells (PMCs) in response to largely unknown patterning cues expressed by the ectoderm. To disco
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e6307aa7808cba2c585eedccce263684
https://pubmed.ncbi.nlm.nih.gov/26755701
https://pubmed.ncbi.nlm.nih.gov/26755701