Zobrazeno 1 - 10
of 240
pro vyhledávání: '"Daniel S Rokhsar"'
Autor:
Regina Rillo-Bohn, Renzo Adilardi, Therese Mitros, Barış Avşaroğlu, Lewis Stevens, Simone Köhler, Joshua Bayes, Clara Wang, Sabrina Lin, K Alienor Baskevitch, Daniel S Rokhsar, Abby F Dernburg
Publikováno v:
eLife, Vol 10 (2021)
Meiosis is conserved across eukaryotes yet varies in the details of its execution. Here we describe a new comparative model system for molecular analysis of meiosis, the nematode Pristionchus pacificus, a distant relative of the widely studied model
Externí odkaz:
https://doaj.org/article/f03a33e1be724ed2b2fbe6044a015c9a
Publikováno v:
PLoS ONE, Vol 6, Iss 8, p e23501 (2011)
We describe a new algorithm, meraculous, for whole genome assembly of deep paired-end short reads, and apply it to the assembly of a dataset of paired 75-bp Illumina reads derived from the 15.4 megabase genome of the haploid yeast Pichia stipitis. Mo
Externí odkaz:
https://doaj.org/article/685d67c455ea469f9022be634989dccd
Autor:
Jessen V. Bredeson, Austin B. Mudd, Sofia Medina-Ruiz, Therese Mitros, Owen Kabnick Smith, Kelly E. Miller, Jessica B. Lyons, Sanjit S. Batra, Joseph Park, Kodiak C. Berkoff, Christopher Plott, Jane Grimwood, Jeremy Schmutz, Guadalupe Aguirre-Figueroa, Mustafa K. Khokha, Maura Lane, Isabelle Philipp, Mara Laslo, James Hanken, Gwenneg Kerdivel, Nicolas Buisine, Laurent M. Sachs, Daniel R. Buchholz, Taejoon Kwon, Heidi Smith-Parker, Marcos Gridi-Papp, Michael J. Ryan, Robert D. Denton, John H. Malone, John B. Wallingford, Aaron F. Straight, Rebecca Heald, Dirk Hockemeyer, Richard M. Harland, Daniel S. Rokhsar
Publikováno v:
Nature Communications, Vol 15, Iss 1, Pp 1-18 (2024)
Abstract Frogs are an ecologically diverse and phylogenetically ancient group of anuran amphibians that include important vertebrate cell and developmental model systems, notably the genus Xenopus. Here we report a high-quality reference genome seque
Externí odkaz:
https://doaj.org/article/9f0d24ceb42e45d88c1f3bffc99c544b
Autor:
Dan Daniel Erdmann-Pham, Sanjit Singh Batra, Timothy K. Turkalo, James Durbin, Marco Blanchette, Iwei Yeh, Hunter Shain, Boris C. Bastian, Yun S. Song, Daniel S. Rokhsar, Dirk Hockemeyer
Publikováno v:
Nature Communications, Vol 14, Iss 1, Pp 1-17 (2023)
Abstract Chromosomal rearrangements can initiate and drive cancer progression, yet it has been challenging to evaluate their impact, especially in genetically heterogeneous solid cancers. To address this problem we developed HiDENSEC, a new computati
Externí odkaz:
https://doaj.org/article/ed3755dd242a46369848794dde819c04
Autor:
Adam M. Session, Daniel S. Rokhsar
Publikováno v:
Nature Communications, Vol 14, Iss 1, Pp 1-14 (2023)
Abstract Hybridization brings together chromosome sets from two or more distinct progenitor species. Genome duplication associated with hybridization, or allopolyploidy, allows these chromosome sets to persist as distinct subgenomes during subsequent
Externí odkaz:
https://doaj.org/article/c7f768fca09f403bb5696bc31c68bcf3
Autor:
Morag E. Ferguson, Rodney P. Eyles, Ana Luísa Garcia-Oliveira, Fortunus Kapinga, Esther A. Masumba, Teddy Amuge, Jessen V. Bredeson, Daniel S. Rokhsar, Jessica B. Lyons, Trushar Shah, Steve Rounsley, Geoffrey Mkamilo
Publikováno v:
Frontiers in Plant Science, Vol 14 (2023)
Cassava (Manihot esculenta Crantz) is a food and industrial storage root crop with substantial potential to contribute to managing risk associated with climate change due to its inherent resilience and in providing a biodegradable option in manufactu
Externí odkaz:
https://doaj.org/article/7959d0072fba4ef2b1621740b8cf86ae
Autor:
Jessen V. Bredeson, Jessica B. Lyons, Ibukun O. Oniyinde, Nneka R. Okereke, Olufisayo Kolade, Ikenna Nnabue, Christian O. Nwadili, Eva Hřibová, Matthew Parker, Jeremiah Nwogha, Shengqiang Shu, Joseph Carlson, Robert Kariba, Samuel Muthemba, Katarzyna Knop, Geoffrey J. Barton, Anna V. Sherwood, Antonio Lopez-Montes, Robert Asiedu, Ramni Jamnadass, Alice Muchugi, David Goodstein, Chiedozie N. Egesi, Jonathan Featherston, Asrat Asfaw, Gordon G. Simpson, Jaroslav Doležel, Prasad S. Hendre, Allen Van Deynze, Pullikanti Lava Kumar, Jude E. Obidiegwu, Ranjana Bhattacharjee, Daniel S. Rokhsar
Publikováno v:
Nature Communications, Vol 13, Iss 1, Pp 1-16 (2022)
While greater yam provides food and income security for millions of people around the world, there are limited genomic resources available. Here, the authors report a chromosome-scale assembly of the greater yam genome as well as quantitative trait l
Externí odkaz:
https://doaj.org/article/eb35eea4e0664d9da945b73fc5c47ae6
CRISPR-Cas9-mediated knockout of CYP79D1 and CYP79D2 in cassava attenuates toxic cyanogen production
Autor:
Michael A. Gomez, Kodiak C. Berkoff, Baljeet K. Gill, Anthony T. Iavarone, Samantha E. Lieberman, Jessica M. Ma, Alex Schultink, Nicholas G. Karavolias, Stacia K. Wyman, Raj Deepika Chauhan, Nigel J. Taylor, Brian J. Staskawicz, Myeong-Je Cho, Daniel S. Rokhsar, Jessica B. Lyons
Publikováno v:
Frontiers in Plant Science, Vol 13 (2023)
Cassava (Manihot esculenta) is a starchy root crop that supports over a billion people in tropical and subtropical regions of the world. This staple, however, produces the neurotoxin cyanide and requires processing for safe consumption. Excessive con
Externí odkaz:
https://doaj.org/article/802deef676b042ecb2373b68a6153b7e
Autor:
Guohong Albert Wu, Chikatoshi Sugimoto, Hideyasu Kinjo, Chika Azama, Fumimasa Mitsube, Manuel Talon, Frederick G. Gmitter, Daniel S. Rokhsar
Publikováno v:
Nature Communications, Vol 12, Iss 1, Pp 1-10 (2021)
To explore the nature of wild and cultivated mandarins, the authors carry out genomic analysis of diverse east Asian citrus. The discovery of a wild species Citrus ryukyuensis native to the Ryukyu islands and a new population of wild mainland Asian m
Externí odkaz:
https://doaj.org/article/bf75e0610163452f908391e2a7d5a52f
Autor:
Gustavo Sanchez, Fernando Á. Fernández-Álvarez, Morag Taite, Chikatoshi Sugimoto, Jeffrey Jolly, Oleg Simakov, Ferdinand Marlétaz, Louise Allcock, Daniel S. Rokhsar
Publikováno v:
Communications Biology, Vol 4, Iss 1, Pp 1-9 (2021)
Sanchez, Rokhsar, and colleagues use genome skimming to generate DNA markers for phylogenomic analyses of bobtail and bottletail squid. The ancestral state of bioluminescence suggests that the Sepiolinae ancestor possessed a bilobed light organ with
Externí odkaz:
https://doaj.org/article/e614fe23d9d141fdb55832b03988d97c