Zobrazeno 1 - 10
of 39
pro vyhledávání: '"Daniel MacMillan"'
Autor:
Natalie N. Kinloch, Aniqa Shahid, Winnie Dong, Don Kirkby, Bradley R. Jones, Charlotte J. Beelen, Daniel MacMillan, Guinevere Q. Lee, Talia M. Mota, Hanwei Sudderuddin, Evan Barad, Marianne Harris, Chanson J. Brumme, R. Brad Jones, Mark A. Brockman, Jeffrey B. Joy, Zabrina L. Brumme
Publikováno v:
mBio, Vol 14, Iss 6 (2023)
ABSTRACTIn order to cure human immunodeficiency virus (HIV), we need to better understand the within-host evolutionary origins of the small reservoir of genome-intact proviruses that persist within infected cells during antiretroviral therapy (ART).
Externí odkaz:
https://doaj.org/article/1447a0402b68443b8658e7d4faad4893
Autor:
F. Harrison Omondi, Hanwei Sudderuddin, Aniqa Shahid, Natalie N. Kinloch, Bradley R. Jones, Rachel L. Miller, Olivia Tsai, Daniel MacMillan, Alicja Trocha, Mark A. Brockman, Chanson J. Brumme, Jeffrey B. Joy, Richard Liang, Bruce D. Walker, Zabrina L. Brumme
Publikováno v:
mBio, Vol 12, Iss 6 (2021)
ABSTRACT Curing HIV will require eliminating the reservoir of integrated, replication-competent proviruses that persist despite antiretroviral therapy (ART). Understanding the burden, genetic diversity, and longevity of persisting proviruses in diver
Externí odkaz:
https://doaj.org/article/e29d5e60d3034aedb7b7c5c53808e009
Autor:
Zhuyi Xue, René L. Warren, Ewan A. Gibb, Daniel MacMillan, Johnathan Wong, Readman Chiu, S. Austin Hammond, Chen Yang, Ka Ming Nip, Catherine A. Ennis, Abigail Hahn, Sheila Reynolds, Inanc Birol
Publikováno v:
BMC Genomics, Vol 19, Iss 1, Pp 1-12 (2018)
Abstract Background Alternative polyadenylation (APA) results in messenger RNA molecules with different 3′ untranslated regions (3’ UTRs), affecting the molecules’ stability, localization, and translation. APA is pervasive and implicated in can
Externí odkaz:
https://doaj.org/article/7b76dd89454a4e668ec2ad5f9b270701
Autor:
Jonathan M. Loree, Steven J.M. Jones, Marco A. Marra, Janessa Laskin, Stephen Yip, Daniel J. Renouf, David F. Schaeffer, Howard J. Lim, Sophie Sun, Tony Ng, Basile Tessier-Cloutier, Yongjun Zhao, Andrew J. Mungall, Richard A. Moore, Eric Chuah, Laura M. Williamson, Daniel MacMillan, Joanna M. Karasinska, Reanne Bowlby, Marcus Carreira, Caleb Choo, Caralyn Reisle, Karen Mungall, James T. Topham, Erin Pleasance, Cameron J. Grisdale, Erica S. Tsang
Supplemental Data
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4cb018b84d9e04b991d53f8c8627e26e
https://doi.org/10.1158/1078-0432.22479506
https://doi.org/10.1158/1078-0432.22479506
Autor:
Jonathan M. Loree, Steven J.M. Jones, Marco A. Marra, Janessa Laskin, Stephen Yip, Daniel J. Renouf, David F. Schaeffer, Howard J. Lim, Sophie Sun, Tony Ng, Basile Tessier-Cloutier, Yongjun Zhao, Andrew J. Mungall, Richard A. Moore, Eric Chuah, Laura M. Williamson, Daniel MacMillan, Joanna M. Karasinska, Reanne Bowlby, Marcus Carreira, Caleb Choo, Caralyn Reisle, Karen Mungall, James T. Topham, Erin Pleasance, Cameron J. Grisdale, Erica S. Tsang
Supplemental Table 2
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::44a6d3e06e2f6f549dd5202c57480327
https://doi.org/10.1158/1078-0432.22479500.v1
https://doi.org/10.1158/1078-0432.22479500.v1
Autor:
Jonathan M. Loree, Steven J.M. Jones, Marco A. Marra, Janessa Laskin, Stephen Yip, Daniel J. Renouf, David F. Schaeffer, Howard J. Lim, Sophie Sun, Tony Ng, Basile Tessier-Cloutier, Yongjun Zhao, Andrew J. Mungall, Richard A. Moore, Eric Chuah, Laura M. Williamson, Daniel MacMillan, Joanna M. Karasinska, Reanne Bowlby, Marcus Carreira, Caleb Choo, Caralyn Reisle, Karen Mungall, James T. Topham, Erin Pleasance, Cameron J. Grisdale, Erica S. Tsang
Supplemental Table 1
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::758fde34e55ba9d50bbdc4d3159d48c0
https://doi.org/10.1158/1078-0432.22479503.v1
https://doi.org/10.1158/1078-0432.22479503.v1
Autor:
Jonathan M. Loree, Steven J.M. Jones, Marco A. Marra, Janessa Laskin, Stephen Yip, Daniel J. Renouf, David F. Schaeffer, Howard J. Lim, Sophie Sun, Tony Ng, Basile Tessier-Cloutier, Yongjun Zhao, Andrew J. Mungall, Richard A. Moore, Eric Chuah, Laura M. Williamson, Daniel MacMillan, Joanna M. Karasinska, Reanne Bowlby, Marcus Carreira, Caleb Choo, Caralyn Reisle, Karen Mungall, James T. Topham, Erin Pleasance, Cameron J. Grisdale, Erica S. Tsang
Purpose:Gene fusions are important oncogenic drivers and many are actionable. Whole-genome and transcriptome (WGS and RNA-seq, respectively) sequencing can discover novel clinically relevant fusions.Experimental Design:Using WGS and RNA-seq, we revie
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d98f0b0e4af43af53927a3db7e60cf5c
https://doi.org/10.1158/1078-0432.c.6530231
https://doi.org/10.1158/1078-0432.c.6530231
Autor:
James T. Topham, Caralyn Reisle, Cameron J. Grisdale, Jonathan M. Loree, Reanne Bowlby, Sophie Sun, Karen Mungall, Basile Tessier-Cloutier, Laura Williamson, Marco A. Marra, Erin Pleasance, Caleb Choo, Andrew J. Mungall, Richard A. Moore, Daniel J. Renouf, Tony Ng, David F. Schaeffer, Stephen Yip, Joanna M Karasinska, Eric Chuah, Yongjun Zhao, Daniel MacMillan, Janessa Laskin, Marcus Carreira, Steven J.M. Jones, Erica S Tsang, Howard John Lim
Publikováno v:
Clinical Cancer Research. 27:522-531
Purpose:Gene fusions are important oncogenic drivers and many are actionable. Whole-genome and transcriptome (WGS and RNA-seq, respectively) sequencing can discover novel clinically relevant fusions.Experimental Design:Using WGS and RNA-seq, we revie
Autor:
Cameron J. Grisdale, Scott D. Brown, Kevin Y. Fan, Wei Zhang, Caralyn Reisle, Zoltan Bozoky, Robert A. Holt, Tariq Vira, Richard Corbett, Melika Bonakdar, My Linh Thibodeau, Kathleen Wee, Dean Cheng, Luka Culibrk, Marcus Carreira, David F. Schaeffer, Deirdre Weymann, Anna V. Tinker, Eric Y. Zhao, Michael K.C. Lee, Karen A. Gelmon, Karen Mungall, Richard A. Moore, Dean A. Regier, Daniel J. Renouf, Zusheng Zong, Reva Shenwai, Stephen Chia, Jahanshah Ashkani, Ana Fisic, Stephen Yip, Darryl D’Souza, Yussanne Ma, Daniel MacMillan, Erin Pleasance, Steve Bilobram, Alexandra Fok, Amir Muhammadzadeh, Jean-Michel Lavoie, Martin R. Jones, Hillary Pearson, Simon K. Chan, Balvir Deol, Steven J.M. Jones, Andrew J. Mungall, Mya Warren, Gregory A. Taylor, Elisa Majounie, Harwood H. Kwan, Eric Chuah, Howard John Lim, Sara Sadeghi, Dustin Bleile, Emma Titmuss, Reanne Bowlby, Anna Davies, Laura Williamson, Jessica Nelson, Caleb Choo, Jasleen K. Grewal, Katherine Dixon, Yongjun Zhao, Shehara Mendis, Yaoqing Shen, Janessa Laskin, Joanna M. Karasinska, Veronika Csizmok, Tina Wong, Sophie Sun, Kasmintan A. Schrader, Marco A. Marra
Publikováno v:
Nature Cancer. 1:452-468
Advanced and metastatic tumors with complex treatment histories drive cancer mortality. Here we describe the POG570 cohort, a comprehensive whole-genome, transcriptome and clinical dataset, amenable for exploration of the impacts of therapies on geno
Autor:
Zabrina L. Brumme, Bradley R Jones, F. Harrison Omondi, Chanson J. Brumme, Natalie N. Kinloch, Olivia Tsai, Hanwei Sudderuddin, Daniel MacMillan, Mark A. Brockman, Alicja Trocha, Richard H. Liang, Bruce D. Walker, Jeffrey B. Joy, Rachel L Miller, Aniqa Shahid
Publikováno v:
mBio, Vol 12, Iss 6 (2021)
mBio
mBio
Curing HIV will require eliminating the reservoir of integrated, replication-competent proviruses that persist despite antiretroviral therapy (ART). Understanding the burden, genetic diversity and longevity of persisting proviruses in diverse individ