Zobrazeno 1 - 10
of 226
pro vyhledávání: '"Daniel H. Huson"'
Autor:
Rachana Banerjee, Narendrakumar M. Chaudhari, Abhishake Lahiri, Anupam Gautam, Debaleena Bhowmik, Chitra Dutta, Sujay Chattopadhyay, Daniel H. Huson, Sandip Paul
Publikováno v:
Frontiers in Microbiology, Vol 15 (2024)
Externí odkaz:
https://doaj.org/article/37c7af962c9b46798fb87913b7577b84
Autor:
Catherine M. Spirito, Timo N. Lucas, Sascha Patz, Byoung Seung Jeon, Jeffrey J. Werner, Lauren H. Trondsen, Juan J. Guzman, Daniel H. Huson, Largus T. Angenent
Publikováno v:
mSystems, Vol 9, Iss 8 (2024)
ABSTRACT Medium-chain carboxylates (MCCs) are used in various industrial applications. These chemicals are typically extracted from palm oil, which is deemed not sustainable. Recent research has focused on microbial chain elongation using reactors to
Externí odkaz:
https://doaj.org/article/cfa2e138054a4c5585cf27b759455321
Autor:
Isabella Casini, Tim McCubbin, Sofia Esquivel-Elizondo, Guillermo G. Luque, Daria Evseeva, Christian Fink, Sebastian Beblawy, Nicholas D. Youngblut, Ludmilla Aristilde, Daniel H. Huson, Andreas Dräger, Ruth E. Ley, Esteban Marcellin, Largus T. Angenent, Bastian Molitor
Publikováno v:
iScience, Vol 26, Iss 10, Pp 108016- (2023)
Summary: Methanogenesis allows methanogenic archaea to generate cellular energy for their growth while producing methane. Thermophilic hydrogenotrophic species of the genus Methanothermobacter have been recognized as robust biocatalysts for a circula
Externí odkaz:
https://doaj.org/article/c5cc7ac8f344453084d7105ddbd16e5d
Autor:
David Bryant, Daniel H. Huson
Publikováno v:
Frontiers in Bioinformatics, Vol 3 (2023)
NeighborNet constructs phylogenetic networks to visualize distance data. It is a popular method used in a wide range of applications. While several studies have investigated its mathematical features, here we focus on computational aspects. The algor
Externí odkaz:
https://doaj.org/article/81877778bf944a3b8120ab51e85aedc2
Autor:
Daniel H. Huson, Banu Cetinkaya
Publikováno v:
Frontiers in Bioinformatics, Vol 3 (2023)
Phylogenetic analysis frequently leads to the creation of many phylogenetic trees, either from using multiple genes or methods, or through bootstrapping or Bayesian analysis. A consensus tree is often used to summarize what the trees have in common.
Externí odkaz:
https://doaj.org/article/eb6d02dc400f4fce877713783c6e4eca
Interactive analysis of biosurfactants in fruit-waste fermentation samples using BioSurfDB and MEGAN
Autor:
Gabriela Fiori da Silva, Anupam Gautam, Iolanda Cristina Silveira Duarte, Tiago Palladino Delforno, Valéria Maia de Oliveira, Daniel H. Huson
Publikováno v:
Scientific Reports, Vol 12, Iss 1, Pp 1-11 (2022)
Abstract Agroindustrial waste, such as fruit residues, are a renewable, abundant, low-cost, commonly-used carbon source. Biosurfactants are molecules of increasing interest due to their multifunctional properties, biodegradable nature and low toxicit
Externí odkaz:
https://doaj.org/article/fb3f4818f0ae4a9993f1e39c290fd863
Autor:
Krithika Arumugam, Irina Bessarab, Mindia A. S. Haryono, Xianghui Liu, Rogelio E. Zuniga–Montanez, Samarpita Roy, Guanglei Qiu, Daniela I. Drautz–Moses, Ying Yu Law, Stefan Wuertz, Federico M. Lauro, Daniel H. Huson, Rohan B. H. Williams
Publikováno v:
npj Biofilms and Microbiomes, Vol 7, Iss 1, Pp 1-13 (2021)
Abstract New long read sequencing technologies offer huge potential for effective recovery of complete, closed genomes from complex microbial communities. Using long read data (ONT MinION) obtained from an ensemble of activated sludge enrichment bior
Externí odkaz:
https://doaj.org/article/0e7f1b54b39d45908d7c06e60e12a27c
Publikováno v:
BMC Bioinformatics, Vol 21, Iss S13, Pp 1-12 (2020)
Abstract Background Advances in mobile sequencing devices and laptop performance make metagenomic sequencing and analysis in the field a technologically feasible prospect. However, metagenomic analysis pipelines are usually designed to run on servers
Externí odkaz:
https://doaj.org/article/1172cc8277974f0da85c5310ca7980e9
Publikováno v:
mSystems, Vol 7, Iss 1 (2022)
ABSTRACT In microbiome analysis, one main approach is to align metagenomic sequencing reads against a protein reference database, such as NCBI-nr, and then to perform taxonomic and functional binning based on the alignments. This approach is embodied
Externí odkaz:
https://doaj.org/article/749efe1eff8a4be784aa242c02abd7e6
The evolutionary history of species is traditionally represented using a rooted phylogenetic tree. However, when reticulate events such as hybridization, horizontal gene transfer or recombination are believed to be involved, phylogenetic networks tha
