RNA structures and their molecular evolution in HIV evolution of robustness in RNA structures and theoretical systems

Autor: Dang, Kristen Kamerath. Burch, Christina L. Swanstrom, R.

Thesis (Ph. D.)--University of North Carolina at Chapel Hill, 2008.
Title from electronic title page (viewed Dec. 11, 2008). "... in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Department of Biomedical E

Externí odkaz: http://dc.lib.unc.edu/u?/etd,1861

Tissue-Specific Expression Patterns of Arabidopsis NF-Y Transcription Factors Suggest Potential for Extensive Combinatorial Complexity

Autor: Siefers, Nicholas, Dang, Kristen, Kumimoto, Roderick W., Bynum, William Edwards, Tayrose, Gregory, Holt, Ben F.

Publikováno v: Plant Physiology, 2009 Feb 01. 149(2), 625-641.

Externí odkaz: https://www.jstor.org/stable/40537659

A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery

Autor: Creason, Allison, Haan, David, Dang, Kristen, Chiotti, Kami E, Inkman, Matthew, Lamb, Andrew, Yu, Thomas, Hu, Yin, Norman, Thea C, Buchanan, Alex, van Baren, Marijke J, Spangler, Ryan, Rollins, M Rick, Spellman, Paul T, Rozanov, Dmitri, Zhang, Jin, Maher, Christopher A, Caloian, Cristian, Watson, John D, Uhrig, Sebastian, Haas, Brian J, Jain, Miten, Akeson, Mark, Ahsen, Mehmet Eren, SMC-RNA Challenge Participants, Stolovitzky, Gustavo, Guinney, Justin, Boutros, Paul C, Stuart, Joshua M, Ellrott, Kyle

Publikováno v: Cell systems, vol 12, iss 8

The accurate identification and quantitation of RNA isoforms present in the cancer transcriptome is key for analyses ranging from the inference of the impacts of somatic variants to pathway analysis to biomarker development and subtype discovery. The

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od_______325::f35994f11622f6f02f1577c3e32233cc
https://escholarship.org/uc/item/2g61t5rp

Crowdsourced mapping of unexplored target space of kinase inhibitors

Autor: Cichonska, Anna, Ravikumar, Balaguru, Allaway, Robert J., Wan, Fangping, Park, Sungjoon, Isayev, Olexandr, Li, Shuya, Mason, Michael, Lamb, Andrew, Tanoli, Ziaurrehman, Jeon, Minji, Kim, Sunkyu, Popova, Mariya, Capuzzi, Stephen, Zeng, Jianyang, Dang, Kristen, Koytiger, Gregory, Kang, Jaewoo, Wells, Carrow I., Willson, Timothy M., Oprea, Tudor I, Schlessinger, Avner, Drewry, David H., Stolovitzky, Gustavo, Wennerberg, Krister, Guinney, Justin, Aittokallio, Tero Antero

Publikováno v: Cichonska, Anna Ravikumar, Balaguru Allaway, Robert J. Wan, Fangping Park, Sungjoon Isayev, Olexandr Li, Shuya Mason, Michael Lamb, Andrew Tanoli, Ziaurrehman Jeon, Minji Kim, Sunkyu Popova, Mariya Capuzzi, Stephen Zeng, Jianyang Dang, Kristen Koytiger, Gregory Kang, Jaewoo Wells, Carrow I. Willson, Timothy M. Oprea, Tudor I Schlessinger, Avner Drewry, David H. Stolovitzky, Gustavo Wennerberg, Krister Guinney, Justin Aittokallio, Tero Antero . Crowdsourced mapping of unexplored target space of kinase inhibitors. Nature Communications. 2021, 12(1), 1-18
Nature Communications

Externí odkaz: http://hdl.handle.net/10852/93209
https://www.duo.uio.no/bitstream/handle/10852/93209/1/s41467-021-23165-1.pdf

Crowdsourced mapping of unexplored target space of kinase inhibitors

Autor: Cichonska, Anna, Ravikumar, Balaguru, Allaway, Robert J., Wan, Fangping, Park, Sungjoon, Isayev, Olexandr, Li, Shuya, Mason, Michael, Lamb, Andrew, Tanoli, Ziaurrehman, Jeon, Minji, Kim, Sunkyu, Popova, Mariya, Capuzzi, Stephen, Zeng, Jianyang, Dang, Kristen, Koytiger, Gregory, Kang, Jaewoo, Wells, Carrow I., Willson, Timothy M., Oprea, Tudor I, Schlessinger, Avner, Drewry, David H., Stolovitzky, Gustavo, Wennerberg, Krister, Guinney, Justin, Aittokallio, Tero Antero

Publikováno v: Nature Communications

Despite decades of intensive search for compounds that modulate the activity of particular protein targets, a large proportion of the human kinome remains as yet undrugged. Effective approaches are therefore required to map the massive space of unexp

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid_dedup__::dd632b6adb88139602eef2f860a7c71b
https://pubmed.ncbi.nlm.nih.gov/34083538