Zobrazeno 1 - 10
of 34
pro vyhledávání: '"Danang, Crysnanto"'
Autor:
Xiaoting Xia, Fengwei Zhang, Shuang Li, Xiaoyu Luo, Lixin Peng, Zheng Dong, Hubert Pausch, Alexander S. Leonard, Danang Crysnanto, Shikang Wang, Bin Tong, Johannes A. Lenstra, Jianlin Han, Fuyong Li, Tieshan Xu, Lihong Gu, Liangliang Jin, Ruihua Dang, Yongzhen Huang, Xianyong Lan, Gang Ren, Yu Wang, Yuanpeng Gao, Zhijie Ma, Haijian Cheng, Yun Ma, Hong Chen, Weijun Pang, Chuzhao Lei, Ningbo Chen
Publikováno v:
Genome Biology, Vol 24, Iss 1, Pp 1-22 (2023)
Abstract Background Structural variations (SVs) in individual genomes are major determinants of complex traits, including adaptability to environmental variables. The Mongolian and Hainan cattle breeds in East Asia are of taurine and indicine origins
Externí odkaz:
https://doaj.org/article/58caa3921a344e52a6c318514f981a68
Publikováno v:
Genome Biology, Vol 24, Iss 1, Pp 1-24 (2023)
Abstract Background Several models and algorithms have been proposed to build pangenomes from multiple input assemblies, but their impact on variant representation, and consequently downstream analyses, is largely unknown. Results We create multi-spe
Externí odkaz:
https://doaj.org/article/6ff244a5198145a0b95816bedba94042
Autor:
Alexander S. Leonard, Danang Crysnanto, Zih-Hua Fang, Michael P. Heaton, Brian L. Vander Ley, Carolina Herrera, Heinrich Bollwein, Derek M. Bickhart, Kristen L. Kuhn, Timothy P. L. Smith, Benjamin D. Rosen, Hubert Pausch
Publikováno v:
Nature Communications, Vol 13, Iss 1, Pp 1-13 (2022)
Pangenomes have a number of advantages over linear reference assemblies. Here the authors use bovine haplotype-resolved assemblies to show that structural variant-based pangenomes are consistent regardless of sequence platform, assembler, or coverage
Externí odkaz:
https://doaj.org/article/57ff639592064173af9b68fcf0522c73
Autor:
Adéla Nosková, Meenu Bhati, Naveen Kumar Kadri, Danang Crysnanto, Stefan Neuenschwander, Andreas Hofer, Hubert Pausch
Publikováno v:
BMC Genomics, Vol 22, Iss 1, Pp 1-14 (2021)
Abstract Background The key-ancestor approach has been frequently applied to prioritize individuals for whole-genome sequencing based on their marginal genetic contribution to current populations. Using this approach, we selected 70 key ancestors fro
Externí odkaz:
https://doaj.org/article/cfaa704f6eb74628995f3788737fdc0d
Autor:
Danang Crysnanto, Hubert Pausch
Publikováno v:
Genome Biology, Vol 21, Iss 1, Pp 1-27 (2020)
Abstract Background The current bovine genomic reference sequence was assembled from a Hereford cow. The resulting linear assembly lacks diversity because it does not contain allelic variation, a drawback of linear references that causes reference al
Externí odkaz:
https://doaj.org/article/5663407fdbf54e81bdab276f97df38ea
Publikováno v:
BMC Genomics, Vol 21, Iss 1, Pp 1-14 (2020)
Abstract Background Autochthonous cattle breeds are an important source of genetic variation because they might carry alleles that enable them to adapt to local environment and food conditions. Original Braunvieh (OB) is a local cattle breed of Switz
Externí odkaz:
https://doaj.org/article/deed6cc358854bf2994c543382a2026b
Autor:
Danang Crysnanto, Darren J. Obbard
Publikováno v:
BMC Evolutionary Biology, Vol 19, Iss 1, Pp 1-12 (2019)
Abstract Background RNA interference (RNAi) related pathways provide defense against viruses and transposable elements, and have been implicated in the suppression of meiotic drive elements. Genes in these pathways often exhibit high levels of adapti
Externí odkaz:
https://doaj.org/article/cc79b31521a44c65a5468101307fb43a
Publikováno v:
Genetics Selection Evolution, Vol 51, Iss 1, Pp 1-15 (2019)
Abstract Background Genotyping of sequence variants typically involves, as a first step, the alignment of sequencing reads to a linear reference genome. Because a linear reference genome represents only a small fraction of all the DNA sequence variat
Externí odkaz:
https://doaj.org/article/b887bc1710114a99b634f4978de2ff43
Autor:
Maya Hiltpold, Guanglin Niu, Naveen Kumar Kadri, Danang Crysnanto, Zih-Hua Fang, Mirjam Spengeler, Fritz Schmitz-Hsu, Christian Fuerst, Hermann Schwarzenbacher, Franz R Seefried, Frauke Seehusen, Ulrich Witschi, Angelika Schnieke, Ruedi Fries, Heinrich Bollwein, Krzysztof Flisikowski, Hubert Pausch
Publikováno v:
PLoS Genetics, Vol 16, Iss 5, p e1008804 (2020)
Cattle are ideally suited to investigate the genetics of male reproduction, because semen quality and fertility are recorded for all ejaculates of artificial insemination bulls. We analysed 26,090 ejaculates of 794 Brown Swiss bulls to assess ejacula
Externí odkaz:
https://doaj.org/article/39e05ef8225c40d5bcb929771213748c
Autor:
Timothy P. L. Smith, Hubert Pausch, C. Herrera, Michael P. Heaton, Derek M. Bickhart, Kristen L. Kuhn, Benjamin D. Rosen, Brian L. Vander Ley, Danang Crysnanto, Alexander S. Leonard, Zih-Hua Fang, Heinrich Bollwein
Publikováno v:
Nature Communications, 13 (1)
Advantages of pangenomes over linear reference assemblies for genome research have recently been established. However, potential effects of sequence platform and assembly approach, or of combining assemblies created by different approaches, on pangen
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::492a8d23a9a650ad7c1153a765948a2e
https://doi.org/10.1038/s41467-022-30680-2
https://doi.org/10.1038/s41467-022-30680-2