Zobrazeno 1 - 10
of 13
pro vyhledávání: '"Dana Wyman"'
Autor:
Fairlie Reese, Brian Williams, Gabriela Balderrama-Gutierrez, Dana Wyman, Muhammed Hasan Çelik, Elisabeth Rebboah, Narges Rezaie, Diane Trout, Milad Razavi-Mohseni, Yunzhe Jiang, Beatrice Borsari, Samuel Morabito, Heidi Yahan Liang, Cassandra J. McGill, Sorena Rahmanian, Jasmine Sakr, Shan Jiang, Weihua Zeng, Klebea Carvalho, Annika K. Weimer, Louise A. Dionne, Ariel McShane, Karan Bedi, Shaimae I. Elhajjajy, Sean Upchurch, Jennifer Jou, Ingrid Youngworth, Idan Gabdank, Paul Sud, Otto Jolanki, J. Seth Strattan, Meenakshi S. Kagda, Michael P. Snyder, Ben C. Hitz, Jill E. Moore, Zhiping Weng, David Bennett, Laura Reinholdt, Mats Ljungman, Michael A. Beer, Mark B. Gerstein, Lior Pachter, Roderic Guigó, Barbara J. Wold, Ali Mortazavi
Publikováno v:
bioRxiv
The majority of mammalian genes encode multiple transcript isoforms that result from differential promoter use, changes in exonic splicing, and alternative 3’ end choice. Detecting and quantifying transcript isoforms across tissues, cell types, and
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b322239296bd726f9e03969616ed0b86
https://europepmc.org/articles/PMC10245583/
https://europepmc.org/articles/PMC10245583/
Autor:
Benjamin C. Hitz, Jin-Wook Lee, Otto Jolanki, Meenakshi S. Kagda, Keenan Graham, Paul Sud, Idan Gabdank, J. Seth Strattan, Cricket A. Sloan, Timothy Dreszer, Laurence D. Rowe, Nikhil R. Podduturi, Venkat S. Malladi, Esther T. Chan, Jean M. Davidson, Marcus Ho, Stuart Miyasato, Matt Simison, Forrest Tanaka, Yunhai Luo, Ian Whaling, Eurie L. Hong, Brian T. Lee, Richard Sandstrom, Eric Rynes, Jemma Nelson, Andrew Nishida, Alyssa Ingersoll, Michael Buckley, Mark Frerker, Daniel S Kim, Nathan Boley, Diane Trout, Alex Dobin, Sorena Rahmanian, Dana Wyman, Gabriela Balderrama-Gutierrez, Fairlie Reese, Neva C. Durand, Olga Dudchenko, David Weisz, Suhas S. P. Rao, Alyssa Blackburn, Dimos Gkountaroulis, Mahdi Sadr, Moshe Olshansky, Yossi Eliaz, Dat Nguyen, Ivan Bochkov, Muhammad Saad Shamim, Ragini Mahajan, Erez Aiden, Tom Gingeras, Simon Heath, Martin Hirst, W. James Kent, Anshul Kundaje, Ali Mortazavi, Barbara Wold, J. Michael Cherry
The Encyclopedia of DNA elements (ENCODE) project is a collaborative effort to create a comprehensive catalog of functional elements in the human genome. The current database comprises more than 19000 functional genomics experiments across more than
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::f3ede3b75e1612917e82c16d5ca40cfb
https://doi.org/10.1101/2023.04.04.535623
https://doi.org/10.1101/2023.04.04.535623
Autor:
Alexandre Bolze, Tracy Basler, Simon White, Andrew Dei Rossi, Dana Wyman, Hang Dai, Pavitra Roychoudhury, Alexander L. Greninger, Kathleen Hayashibara, Mark Beatty, Seema Shah, Sarah Stous, John T. McCrone, Eric Kil, Tyler Cassens, Kevin Tsan, Jason Nguyen, Jimmy Ramirez, Scotty Carter, Elizabeth T. Cirulli, Kelly Schiabor Barrett, Nicole L. Washington, Pedro Belda-Ferre, Sharoni Jacobs, Efren Sandoval, David Becker, James T. Lu, Magnus Isaksson, William Lee, Shishi Luo
Publikováno v:
Med (New York, N.Y.). 3(12)
Between November 2021 and February 2022, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) Delta and Omicron variants co-circulated in the United States, allowing for co-infections and possible recombination events.We sequenced 29,719 posi
Autor:
Alexandre Bolze, Tracy Basler, Simon White, Andrew Dei Rossi, Dana Wyman, Pavitra Roychoudhury, Alexander L. Greninger, Kathleen Hayashibara, Mark Beatty, Seema Shah, Sarah Stous, Eric Kil, Hang Dai, Tyler Cassens, Kevin Tsan, Jason Nguyen, Jimmy Ramirez, Scotty Carter, Elizabeth T. Cirulli, Kelly Schiabor Barrett, Nicole L. Washington, Pedro Belda-Ferre, Sharoni Jacobs, Efren Sandoval, David Becker, James T. Lu, Magnus Isaksson, William Lee, Shishi Luo
Between November 2021 and February 2022, SARS-CoV-2 Delta and Omicron variants co-circulated in the United States, allowing for co-infections and possible recombination events. We sequenced 29,719 positive samples during this period and analyzed the
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::1462e9b70931218d93ffd4c9fe65743d
https://doi.org/10.1101/2022.03.09.22272113
https://doi.org/10.1101/2022.03.09.22272113
Autor:
Alexandre Bolze, Tracy Basler, Simon White, Andrew Dei Rossi, Dana Wyman, Pavitra Roychoudhury, Alex Greninger, Kathleen Hayashibara, Mark Beatty, Seema Shah, Sarah Stous, Eric Kil, Hang Dai, Tyler Cassens, Kevin Tsan, Jason Nguyen, Jimmy M. Ramirez III, Scotty Carter, Elizabeth T. Cirulli, Kelly M. Schiabor Barrett, Nicole L. Washington, Pedro Belda-Ferre, Sharoni Jacobs, Efren Sandoval, David Becker, James T. Lu, Magnus Isaksson, William Lee, Shishi Luo
Publikováno v:
SSRN Electronic Journal.
Autor:
Dana Wyman, Whitney England, Chao Feng, Ali Mortazavi, Robert C. Spitale, Ryan A. Flynn, Yongsheng Shi, Xiuye Wang, Dalen Chan
Publikováno v:
Nucleic acids research, vol 49, iss 20
Nucleic Acids Research
Nucleic Acids Research, vol 49, iss 20
Nucleic Acids Research
Nucleic Acids Research, vol 49, iss 20
RNA molecules can fold into complex structures and interact with trans-acting factors to control their biology. Recent methods have been focused on developing novel tools to measure RNA structure transcriptome-wide, but their utility to study and pre
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::91d7d49690d60c2a56edc1d314631e62
https://escholarship.org/uc/item/9471h7dx
https://escholarship.org/uc/item/9471h7dx
Autor:
Magnus Isaksson, Alexandre Bolze, James T. Lu, Jason Nguyen, Sharoni Jacobs, Kelly M. Schiabor Barrett, Xueqing Wang, Efren Sandoval, Dana Wyman, Nicole L. Washington, David M. Becker, Marc Laurent, William E. Lee, Kevin Tsan, Henrique Machado, Shishi Luo, Simon D. M. White, Andrew Dei Rossi, David T.W. Wong, Jimmy M. Ramirez, Elizabeth T. Cirulli, Tyler Cassens
This study reports on the displacement of Alpha (B.1.1.7) by Delta (B.1.617.2 and its substrains AY.1, AY.2, and AY.3) in the United States. By analyzing RT-qPCR testing results and viral sequencing results of samples collected across the United Stat
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::4742c193f5c8250568aac99fcc874a2e
https://doi.org/10.1101/2021.06.20.21259195
https://doi.org/10.1101/2021.06.20.21259195
Autor:
Alexandre Bolze, Shishi Luo, Simon White, Elizabeth T. Cirulli, Dana Wyman, Andrew Dei Rossi, Henrique Machado, Tyler Cassens, Sharoni Jacobs, Kelly M. Schiabor Barrett, Francisco Tanudjaja, Kevin Tsan, Jason Nguyen, Jimmy M. Ramirez, Efren Sandoval, Xueqing Wang, David Wong, David Becker, Marc Laurent, James T. Lu, Magnus Isaksson, Nicole L. Washington, William Lee
Publikováno v:
SSRN Electronic Journal.
We report on the sequencing of 74,348 SARS-CoV-2 positive samples collected across the United States and show that the Delta variant, first detected in the United States in March 2021, made up the majority of SARS-CoV-2 infections by July 1, 2021 and
Autor:
Ali Mortazavi, Dana Wyman, Robert C. Spitale, Kim Nguyen, Cassandra Joan McGill, Gabriela Balderrama-Gutierrez, Sorena Rahmanian
The steady state expression of each gene is the result of a dynamic transcription and degradation of that gene. While regular RNA-seq methods only measure steady state expression levels, RNA-seq of metabolically labeled RNA identifies transcripts tha
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dbb456f93d4ebaba890c104be6fd6933
https://doi.org/10.1101/2020.05.01.073296
https://doi.org/10.1101/2020.05.01.073296
Autor:
Dalen Chan, Ali Mortazavi, Ryan A. Flynn, Chao Feng, Dana Wyman, Yongsheng Shi, Robert C. Spitale, Xiuye Wang, Whitney England
RNA molecules can fold into complex structures and interact with trans-acting factors to control their biology. Recent methods have been focused on developing novel tools to measure RNA structure transcriptome-wide, but their utility to study and pre
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::28068f1ddbb77fb613ec6b5d9697a011
https://doi.org/10.1101/2020.03.24.006866
https://doi.org/10.1101/2020.03.24.006866