Zobrazeno 1 - 10
of 42
pro vyhledávání: '"Dana A. Opulente"'
Publikováno v:
Frontiers in Microbiology, Vol 14 (2023)
IntroductionEukaryotic life depends on the functional elements encoded by both the nuclear genome and organellar genomes, such as those contained within the mitochondria. The content, size, and structure of the mitochondrial genome varies across orga
Externí odkaz:
https://doaj.org/article/e679e5f3a59c4d5aa832bc6d963a8be1
Autor:
David Peris, Emily J. Ubbelohde, Meihua Christina Kuang, Jacek Kominek, Quinn K. Langdon, Marie Adams, Justin A. Koshalek, Amanda Beth Hulfachor, Dana A. Opulente, David J. Hall, Katie Hyma, Justin C. Fay, Jean-Baptiste Leducq, Guillaume Charron, Christian R. Landry, Diego Libkind, Carla Gonçalves, Paula Gonçalves, José Paulo Sampaio, Qi-Ming Wang, Feng-Yan Bai, Russel L. Wrobel, Chris Todd Hittinger
Publikováno v:
Nature Communications, Vol 14, Iss 1, Pp 1-19 (2023)
Here, the authors describe the geographies, hosts, substrates, and phylogenetic relationships for 1,794 Saccharomyces strains. They provide insight into the genetic and phenotypic diversity in the genus, not seen through prior work focused on the mod
Externí odkaz:
https://doaj.org/article/87582f43464b458fbd1cfe074f6265cc
Autor:
Tadeusz Krassowski, Aisling Y. Coughlan, Xing-Xing Shen, Xiaofan Zhou, Jacek Kominek, Dana A. Opulente, Robert Riley, Igor V. Grigoriev, Nikunj Maheshwari, Denis C. Shields, Cletus P. Kurtzman, Chris Todd Hittinger, Antonis Rokas, Kenneth H. Wolfe
Publikováno v:
Nature Communications, Vol 9, Iss 1, Pp 1-8 (2018)
The genetic code for amino acids is nearly universal, and among eukaryotic nuclear genomes the only known reassignments are of codon CUG in yeasts. Here, the authors identify a third independent CUG transition in budding yeasts that is still ongoing
Externí odkaz:
https://doaj.org/article/cced401e48ce421aa4209a2b5302837c
Autor:
Dana A. Opulente, Emily J. Rollinson, Cleome Bernick-Roehr, Amanda Beth Hulfachor, Antonis Rokas, Cletus P. Kurtzman, Chris Todd Hittinger
Publikováno v:
BMC Biology, Vol 16, Iss 1, Pp 1-15 (2018)
Abstract Background Associations between traits are prevalent in nature, occurring across a diverse range of taxa and traits. Individual traits may co-evolve with one other, and these correlations can be driven by factors intrinsic or extrinsic to an
Externí odkaz:
https://doaj.org/article/9303c2fbf7654e2ebd715f4617ce00ed
Autor:
Rishitha L Nalabothu, Kaitlin J Fisher, Abigail Leavitt LaBella, Taylor A Meyer, Dana A Opulente, John F Wolters, Antonis Rokas, Chris Todd Hittinger
Publikováno v:
Molecular Biology and Evolution.
Xylose is the second most abundant monomeric sugar in plant biomass. Consequently, xylose catabolism is an ecologically important trait for saprotrophic organisms, as well as a fundamentally important trait for industries that hope to convert plant m
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::33147c82599e1974bc7f3beb5a85f1f1
https://doi.org/10.1093/molbev/msad111
https://doi.org/10.1093/molbev/msad111
Autor:
Carla Gonçalves, Jennifer H Wisecaver, Jacek Kominek, Madalena Salema Oom, Maria José Leandro, Xing-Xing Shen, Dana A Opulente, Xiaofan Zhou, David Peris, Cletus P Kurtzman, Chris Todd Hittinger, Antonis Rokas, Paula Gonçalves
Publikováno v:
eLife, Vol 7 (2018)
Fructophily is a rare trait that consists of the preference for fructose over other carbon sources. Here, we show that in a yeast lineage (the Wickerhamiella/Starmerella, W/S clade) comprised of fructophilic species thriving in the high-sugar floral
Externí odkaz:
https://doaj.org/article/42c5a94deb324b8db3c5a037e7bd7187
Autor:
Rishitha L. Nalabothu, Kaitlin J. Fisher, Abigail Leavitt LaBella, Taylor A. Meyer, Dana A. Opulente, John F. Wolters, Antonis Rokas, Chris Todd Hittinger
Xylose is the second most abundant monomeric sugar in plant biomass. Consequently, xylose catabolism is an ecologically important trait for saprotrophic organisms, as well as a fundamentally important trait for industries that hope to convert plant m
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::7ef5c2a3ad4b462ac5729ca42f4c3b09
https://doi.org/10.1101/2022.06.10.495693
https://doi.org/10.1101/2022.06.10.495693
Autor:
David Peris, Emily J. Ubbelohde, Meihua Christina Kuang, Jacek Kominek, Quinn K. Langdon, Marie Adams, Justin A. Koshalek, Amanda Beth Hulfachor, Dana A. Opulente, David J. Hall, Katie Hyma, Justin C. Fay, Jean-Baptiste Leducq, Guillaume Charron, Christian R. Landry, Diego Libkind, Carla Gonçalves, Paula Gonçalves, José Paulo Sampaio, Qi-Ming Wang, Feng-Yan Bai, Russel L. Wrobel, Chris Todd Hittinger
Species is the fundamental unit to quantify biodiversity. In recent years, the model yeast Saccharomyces cerevisiae has seen an increased number of studies related to its geographical distribution, population structure, and phenotypic diversity. Howe
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::30338a73bc6558ba3f4a211c66b5bd67
https://doi.org/10.1101/2022.03.30.486421
https://doi.org/10.1101/2022.03.30.486421
Autor:
Ryan V. Moriarty, Amanda Beth Hulfachor, Kaitlin J. Fisher, Sarah Wright, Lisa Sorlie, Kayla Sylvester, Dana A. Opulente, Quinn K. Langdon, Daniel Rodriguez, Angela Sheddan, Chris Todd Hittinger, Kelly V. Buh, William J. Spurley, Martin Jarzyna, Max A. B. Haase
Publikováno v:
Yeast
Yeasts have broad importance as industrially and clinically relevant microbes and as powerful models for fundamental research, but we are only beginning to understand the roles yeasts play in natural ecosystems. Yeast ecology is often more difficult
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e3730557564acd711bc02d816e2a4388
https://doi.org/10.1101/2021.07.13.452236
https://doi.org/10.1101/2021.07.13.452236
Publikováno v:
PLoS Biology, Vol 19, Iss 4, p e3001185 (2021)
PLoS Biology
PLoS Biology
Reverse ecology is the inference of ecological information from patterns of genomic variation. One rich, heretofore underutilized, source of ecologically relevant genomic information is codon optimality or adaptation. Bias toward codons that match th
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::aa520b2e31d6c81bd22160d084c14335
https://doaj.org/article/4742bb15486f45c19dc9b506aadd6d65
https://doaj.org/article/4742bb15486f45c19dc9b506aadd6d65