Critical Assessment of Conformal Prediction Methods Applied in Binary Classification Settings

Autor: Damjan Krstajic

Publikováno v: Journal of chemical information and modeling. 61(10)

In recent years there has been an increase in the number of scientific papers that suggest using conformal predictions in drug discovery. We consider that some versions of conformal predictions applied in binary settings are embroiled in pitfalls, no

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e8069d484e8b606b2579f26ff95a1471
https://pubmed.ncbi.nlm.nih.gov/34550693

Prediction of overall survival for patients with metastatic castration-resistant prostate cancer: development of a prognostic model through a crowdsourced challenge with open clinical trial data

Autor: Justin Guinney, Tao Wang, Teemu D Laajala, Kimberly Kanigel Winner, J Christopher Bare, Elias Chaibub Neto, Suleiman A Khan, Gopal Peddinti, Antti Airola, Tapio Pahikkala, Tuomas Mirtti, Thomas Yu, Brian M Bot, Liji Shen, Kald Abdallah, Thea Norman, Stephen Friend, Gustavo Stolovitzky, Howard Soule, Christopher J Sweeney, Charles J Ryan, Howard I Scher, Oliver Sartor, Yang Xie, Tero Aittokallio, Fang Liz Zhou, James C Costello, Catalina Anghe, Helia Azima, Robert Baertsch, Pedro J Ballester, Chris Bare, Vinayak Bhandari, Cuong C Dang, Maria Bekker-Nielsen Dunbar, Ann-Sophie Buchardt, Ljubomir Buturovic, Da Cao, Prabhakar Chalise, Junwoo Cho, Tzu-Ming Chu, R Yates Coley, Sailesh Conjeti, Sara Correia, Ziwei Dai, Junqiang Dai, Philip Dargatz, Sam Delavarkhan, Detian Deng, Ankur Dhanik, Yu Du, Aparna Elangovan, Shellie Ellis, Laura L Elo, Shadrielle M Espiritu, Fan Fan, Ashkan B Farshi, Ana Freitas, Brooke Fridley, Christiane Fuchs, Eyal Gofer, Gopalacharyulu Peddinti, Stefan Graw, Russ Greiner, Yuanfang Guan, Jing Guo, Pankaj Gupta, Anna I Guyer, Jiawei Han, Niels R Hansen, Billy HW Chang, Outi Hirvonen, Barbara Huang, Chao Huang, Jinseub Hwang, Joseph G Ibrahim, Vivek Jayaswa, Jouhyun Jeon, Zhicheng Ji, Deekshith Juvvadi, Sirkku Jyrkkiö, Kimberly Kanigel-Winner, Amin Katouzian, Marat D Kazanov, Shahin Khayyer, Dalho Kim, Agnieszka K Golinska, Devin Koestler, Fernanda Kokowicz, Ivan Kondofersky, Norbert Krautenbacher, Damjan Krstajic, Luke Kumar, Christoph Kurz, Matthew Kyan, Michael Laimighofer, Eunjee Lee, Wojciech Lesinski, Miaozhu Li, Ye Li, Qiuyu Lian, Xiaotao Liang, Minseong Lim, Henry Lin, Xihui Lin, Jing Lu, Mehrad Mahmoudian, Roozbeh Manshaei, Richard Meier, Dejan Miljkovic, Krzysztof Mnich, Nassir Navab, Elias C Neto, Yulia Newton, Subhabrata Pal, Byeongju Park, Jaykumar Patel, Swetabh Pathak, Alejandrina Pattin, Donna P Ankerst, Jian Peng, Anne H Petersen, Robin Philip, Stephen R Piccolo, Sebastian Pölsterl, Aneta Polewko-Klim, Karthik Rao, Xiang Ren, Miguel Rocha, Witold R. Rudnicki, Hyunnam Ryu, Hagen Scherb, Raghav Sehgal, Fatemeh Seyednasrollah, Jingbo Shang, Bin Shao, Howard Sher, Motoki Shiga, Artem Sokolov, Julia F Söllner, Lei Song, Josh Stuart, Ren Sun, Nazanin Tahmasebi, Kar-Tong Tan, Lisbeth Tomaziu, Joseph Usset, Yeeleng S Vang, Roberto Vega, Vitor Vieira, David Wang, Difei Wang, Junmei Wang, Lichao Wang, Sheng Wang, Yue Wang, Russ Wolfinger, Chris Wong, Zhenke Wu, Jinfeng Xiao, Xiaohui Xie, Doris Xin, Hojin Yang, Nancy Yu, Xiang Yu, Sulmaz Zahedi, Massimiliano Zanin, Chihao Zhang, Jingwen Zhang, Shihua Zhang, Yanchun Zhang, Hongtu Zhu, Shanfeng Zhu, Yuxin Zhu

Publikováno v: Repositório Científico de Acesso Aberto de Portugal
Repositório Científico de Acesso Aberto de Portugal (RCAAP)
instacron:RCAAP
Lancet Oncol. 18, 132-142 (2017)
Guinney, J, Wang, T, Laajala, T D, Winner, K K, Bare, J C, Neto, E C, Khan, S A, Peddinti, G, Airola, A, Pahikkala, T, Mirtti, T, Yu, T, Bot, B M, Shen, L, Abdallah, K, Norman, T, Friend, S, Stolovitzky, G, Soule, H, Sweeney, C J, Ryan, C J, Scher, H I, Sartor, O, Xie, Y, Aittokallio, T, Zhou, F L, Costello, J C & Prostate Cancer Challenge DREAM Community 2017, ' Prediction of overall survival for patients with metastatic castration-resistant prostate cancer : development of a prognostic model through a crowdsourced challenge with open clinical trial data ', The Lancet: Oncology, vol. 18, no. 1, pp. 132-142 . https://doi.org/10.1016/S1470-2045(16)30560-5

Background: Improvements to prognostic models in metastatic castration-resistant prostate cancer have the potential to augment clinical trial design and guide treatment strategies. In partnership with Project Data Sphere, a not-for-profit initiative

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6e29c71ca03dc8018abacbcb6b41b185
https://doi.org/10.1016/s1470-2045(16)30560-5

Role of Competitive Challenges in Personalized Medicine

Autor: Damjan Krstajic, Ljubomir Buturovic

Publikováno v: 12th Symposium on Neural Network Applications in Electrical Engineering (NEUREL).

Personalized medicine is widely expected to play a key role in the future of healthcare. It is based on new technologies which enable us to find genetic differences between individuals and as a result give us a chance to identify patients likely to b

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::0defb189179de74c48bf13cd693d22b2
https://doi.org/10.1109/neurel.2014.7011484

Reproducibility of telomere length assessment

Autor: Damjan Krstajic, Ljubomir Buturovic

Publikováno v: International Journal of Epidemiology. 44:1738-1739

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::52ff95316ddcd1aa801b3942038fc213
https://doi.org/10.1093/ije/dyv167

Tento výsledek nelze pro nepřihlášené uživatele zobrazit.
K zobrazení výsledku je třeba se přihlásit.