Zobrazeno 1 - 10
of 59
pro vyhledávání: '"Damien M de Vienne"'
Publikováno v:
PLoS Biology, Vol 22, Iss 3, p e3002557 (2024)
Externí odkaz:
https://doaj.org/article/c488f9ffac954f40ad660d6eabeea935
Autor:
Benjamin Guinet, David Lepetit, Sylvain Charlat, Peter N Buhl, David G Notton, Astrid Cruaud, Jean-Yves Rasplus, Julia Stigenberg, Damien M de Vienne, Bastien Boussau, Julien Varaldi
Publikováno v:
eLife, Vol 12 (2023)
The accidental endogenization of viral elements within eukaryotic genomes can occasionally provide significant evolutionary benefits, giving rise to their long-term retention, that is, to viral domestication. For instance, in some endoparasitoid wasp
Externí odkaz:
https://doaj.org/article/37b24b05637f4d2a9528d124989ffca5
Publikováno v:
PLoS Biology, Vol 20, Iss 9, p e3001776 (2022)
Introgression, endosymbiosis, and gene transfer, i.e., horizontal gene flow (HGF), are primordial sources of innovation in all domains of life. Our knowledge on HGF relies on detection methods that exploit some of its signatures left on extant genome
Externí odkaz:
https://doaj.org/article/9852a5e5967f4173b084788c3552f564
Autor:
Daphné Reiss, Gladys Mialdea, Vincent Miele, Damien M de Vienne, Jean Peccoud, Clément Gilbert, Laurent Duret, Sylvain Charlat
Publikováno v:
PLoS Genetics, Vol 15, Iss 2, p e1007965 (2019)
More than any other genome components, Transposable Elements (TEs) have the capacity to move across species barriers through Horizontal Transfer (HT), with substantial evolutionary consequences. Previous large-scale surveys, based on full-genomes com
Externí odkaz:
https://doaj.org/article/dafd43e8ef144313810fd6ca85016f78
Autor:
Damien M de Vienne
Publikováno v:
PLoS Biology, Vol 14, Iss 12, p e2001624 (2016)
The Tree of Life (ToL) is meant to be a unique representation of the evolutionary relationships between all species on earth. Huge efforts are made to assemble such a large tree, helped by the decrease of sequencing costs and improved methods to reco
Externí odkaz:
https://doaj.org/article/f6d9645833fc4c7db9110c2708d217f8
Publikováno v:
PLoS ONE, Vol 8, Iss 6, p e66906 (2013)
Sex predominates in eukaryotes, despite its short-term disadvantage when compared to asexuality. Myriad models have suggested that short-term advantages of sex may be sufficient to counterbalance its twofold costs. However, despite decades of experim
Externí odkaz:
https://doaj.org/article/18a21e1ca54540b08ab8603c9c6c8729
Autor:
Damien M de Vienne, Jérôme Azé
Publikováno v:
PLoS ONE, Vol 7, Iss 11, p e48728 (2012)
The prediction of the network of protein-protein interactions (PPI) of an organism is crucial for the understanding of biological processes and for the development of new drugs. Machine learning methods have been successfully applied to the predictio
Externí odkaz:
https://doaj.org/article/13f13cf2e7ea4abf83ddd08f9a55a98e
Publikováno v:
Systematic Biology
Systematic Biology, 2022, 71 (5), pp.1147-1158. ⟨10.1093/sysbio/syac011⟩
Systematic Biology, 2022, 71 (5), pp.1147-1158. ⟨10.1093/sysbio/syac011⟩
Most species are extinct, those that are not are often unknown. Sequenced and sampled species are often a minority of known ones. Past evolutionary events involving horizontal gene flow, such as horizontal gene transfer, hybridization, introgression,
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f9e62f64b1ec57b4ff1fdc3d3ba74e36
https://doi.org/10.1093/sysbio/syac011
https://doi.org/10.1093/sysbio/syac011
Autor:
Aurore Comte, Théo Tricou, Eric Tannier, Julien Joseph, Aurélie Siberchicot, Simon Penel, Rémi Allio, Frédéric Delsuc, Stéphane Dray, Damien M. de Vienne
The documented code of PhylteR is available at https://github.com/damiendevienne/phylter along with a thorough documentation. All data and scripts used in this study are available on the dedicated GitHub repository available at https://github.com/dam
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5824367f9ee24eebfd4ad9a7cf59dd44
https://hal.science/hal-03995366/file/2023.02.02.526888v1.full.pdf
https://hal.science/hal-03995366/file/2023.02.02.526888v1.full.pdf
Autor:
Simon Penel, Damien M de Vienne
Publikováno v:
Molecular Biology and Evolution
Molecular Biology and Evolution, 2022, 39 (10), pp.msac204. ⟨10.1093/molbev/msac204⟩
Molecular Biology and Evolution, 2022, 39 (10), pp.msac204. ⟨10.1093/molbev/msac204⟩
Many layouts exist for visualizing phylogenetic trees, allowing to display the same information (evolutionary relationships) in different ways. For large phylogenies, the choice of the layout is a key element, because the printable area is limited, a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::087dd63ca20fe46042a21c044cca4e40
https://doi.org/10.1093/molbev/msac204
https://doi.org/10.1093/molbev/msac204