Zobrazeno 1 - 10
of 324
pro vyhledávání: '"Daisuke Kihara"'
Publikováno v:
npj Systems Biology and Applications, Vol 10, Iss 1, Pp 1-12 (2024)
Abstract Understanding the biological functions of proteins is of fundamental importance in modern biology. To represent a function of proteins, Gene Ontology (GO), a controlled vocabulary, is frequently used, because it is easy to handle by computer
Externí odkaz:
https://doaj.org/article/270e9a6ed8f94c4388efcff81ef58fe8
Autor:
Yury V. Bukhman, Susanne Meyer, Li-Fang Chu, Linelle Abueg, Jessica Antosiewicz-Bourget, Jennifer Balacco, Michael Brecht, Erica Dinatale, Olivier Fedrigo, Giulio Formenti, Arkarachai Fungtammasan, Swagarika Jaharlal Giri, Michael Hiller, Kerstin Howe, Daisuke Kihara, Daniel Mamott, Jacquelyn Mountcastle, Sarah Pelan, Keon Rabbani, Ying Sims, Alan Tracey, Jonathan M. D. Wood, Erich D. Jarvis, James A. Thomson, Mark J. P. Chaisson, Ron Stewart
Publikováno v:
Scientific Data, Vol 11, Iss 1, Pp 1-11 (2024)
Abstract Suncus etruscus is one of the world’s smallest mammals, with an average body mass of about 2 grams. The Etruscan shrew’s small body is accompanied by a very high energy demand and numerous metabolic adaptations. Here we report a chromoso
Externí odkaz:
https://doaj.org/article/ec7570f6ca634d4787cf612628d10141
Autor:
Swati Jain, Gherman Uritskiy, Marthandan Mahalingam, Himanshu Batra, Subhash Chand, Hung V Trinh, Charles Beck, Woong-Hee Shin, Wadad Alsalmi, Gustavo Kijak, Leigh A Eller, Jerome Kim, Daisuke Kihara, Sodsai Tovanabutra, Guido Ferrari, Merlin L Robb, Mangala Rao, Venigalla B Rao
Publikováno v:
eLife, Vol 13 (2024)
A productive HIV-1 infection in humans is often established by transmission and propagation of a single transmitted/founder (T/F) virus, which then evolves into a complex mixture of variants during the lifetime of infection. An effective HIV-1 vaccin
Externí odkaz:
https://doaj.org/article/67dbb3b3745540c7a92cab8a513f8bfe
Publikováno v:
Communications Biology, Vol 6, Iss 1, Pp 1-14 (2023)
Abstract Domains are functional and structural units of proteins that govern various biological functions performed by the proteins. Therefore, the characterization of domains in a protein can serve as a proper functional representation of proteins.
Externí odkaz:
https://doaj.org/article/667472b194e3476fbde62c3c0883072a
Autor:
Daisuke Kihara
Publikováno v:
Frontiers in Bioinformatics, Vol 3 (2024)
Externí odkaz:
https://doaj.org/article/4c00cb088026450085e6a16a051380f9
Publikováno v:
Computational and Structural Biotechnology Journal, Vol 21, Iss , Pp 1487-1497 (2023)
One of the key features of intrinsically disordered regions (IDRs) is their ability to interact with a broad range of partner molecules. Multiple types of interacting IDRs were identified including molecular recognition fragments (MoRFs), short linea
Externí odkaz:
https://doaj.org/article/cafd60d47b5d4d1aabb06053916e063a
Autor:
Mourad Elloumi, Mostafa A. Ahmad, Ahmed H. Samak, Ali M. Al-Sharafi, Daisuke Kihara, Ahmed I. Taloba
Publikováno v:
Alexandria Engineering Journal, Vol 61, Iss 12, Pp 9819-9829 (2022)
Non-null tests are more versatile than null tests and could give fast, generic tests with sufficient performance. The non-null testing methods are able to measure aspheric surfaces with substantial deviations from a reference sphere. The ray will ret
Externí odkaz:
https://doaj.org/article/b971a2e9085f44f0a1622e13bc6f1442
Autor:
Huishi Toh, Chentao Yang, Giulio Formenti, Kalpana Raja, Lily Yan, Alan Tracey, William Chow, Kerstin Howe, Lucie A. Bergeron, Guojie Zhang, Bettina Haase, Jacquelyn Mountcastle, Olivier Fedrigo, John Fogg, Bogdan Kirilenko, Chetan Munegowda, Michael Hiller, Aashish Jain, Daisuke Kihara, Arang Rhie, Adam M. Phillippy, Scott A. Swanson, Peng Jiang, Dennis O. Clegg, Erich D. Jarvis, James A. Thomson, Ron Stewart, Mark J. P. Chaisson, Yury V. Bukhman
Publikováno v:
BMC Biology, Vol 20, Iss 1, Pp 1-21 (2022)
Abstract Background The Nile rat (Avicanthis niloticus) is an important animal model because of its robust diurnal rhythm, a cone-rich retina, and a propensity to develop diet-induced diabetes without chemical or genetic modifications. A closer simil
Externí odkaz:
https://doaj.org/article/9c728bac3c2c453abb352401d7a81103
Publikováno v:
Frontiers in Molecular Biosciences, Vol 10 (2023)
Driving mechanisms of many biological functions in a cell include physical interactions of proteins. As protein-protein interactions (PPIs) are also important in disease development, protein-protein interactions are highlighted in the pharmaceutical
Externí odkaz:
https://doaj.org/article/3fd5b256ffec4182b022024f43952255
Autor:
Tunde Aderinwale, Vijay Bharadwaj, Charles Christoffer, Genki Terashi, Zicong Zhang, Rashidedin Jahandideh, Yuki Kagaya, Daisuke Kihara
Publikováno v:
Communications Biology, Vol 5, Iss 1, Pp 1-12 (2022)
3D-AF-Surfer is presented as a computational resource for real-time protein structure comparison search between AlphaFold2 models and PDB entries within seconds to a few minutes.
Externí odkaz:
https://doaj.org/article/8610575ad26f4db68e608b509adf74b2