Zobrazeno 1 - 10
of 211
pro vyhledávání: '"Daisuke, Kohda"'
Publikováno v:
Biophysics and Physicobiology, Vol 20 (2023)
The consistency principle represents a physicochemical condition requisite for ideal protein folding. It assumes that any pair of amino acid residues in partially folded structures has an attractive short-range interaction only if the two residues ar
Externí odkaz:
https://doaj.org/article/74698be165494278a8149f96d31fa103
Publikováno v:
Scientific Reports, Vol 12, Iss 1, Pp 1-11 (2022)
Abstract Multiprobe measurements, such as NMR and hydrogen exchange studies, can provide the equilibrium constant, K, and rate constants for forward and backward processes, k and k′, of the two-state structural changes of a polypeptide on a per-res
Externí odkaz:
https://doaj.org/article/0a645bb0dad946faaf7fb01e5af09037
Autor:
Yuya Taguchi, Takahiro Yamasaki, Marie Ishikawa, Yuki Kawasaki, Ryuji Yukimura, Maki Mitani, Kunio Hirata, Daisuke Kohda
Publikováno v:
Communications Biology, Vol 4, Iss 1, Pp 1-11 (2021)
Yuya Taguchi, Takahiro Yamasaki, et al. determined the crystal structure of the oligosaccharyltransferase enzyme, OST, from Aechaeoglobus fulgidus, in a complex with two substrates. Their work provides valuable insight into the sequon specificity of
Externí odkaz:
https://doaj.org/article/88947496abf54cb3adebc7c19c8b5b65
Autor:
Naomi Inoue, Takeshi Terabayashi, Yuri Takiguchi-Kawashima, Daisuke Fujinami, Shigeru Matsuoka, Masanori Kawano, Kazuhiro Tanaka, Hiroshi Tsumura, Toshimasa Ishizaki, Hisashi Narahara, Daisuke Kohda, Yoshihiro Nishida, Katsuhiro Hanada
Publikováno v:
Scientific Reports, Vol 11, Iss 1, Pp 1-17 (2021)
Abstract DNA replication inhibitors are utilized extensively in studies of molecular biology and as chemotherapy agents in clinical settings. The inhibition of DNA replication often triggers double-stranded DNA breaks (DSBs) at stalled DNA replicatio
Externí odkaz:
https://doaj.org/article/e25dffc15303468893e8fa92c6174e41
Autor:
Kouta Mayanagi, Keisuke Oki, Naoyuki Miyazaki, Sonoko Ishino, Takeshi Yamagami, Kosuke Morikawa, Kenji Iwasaki, Daisuke Kohda, Tsuyoshi Shirai, Yoshizumi Ishino
Publikováno v:
BMC Biology, Vol 18, Iss 1, Pp 1-20 (2020)
Abstract Background DNA polymerase D (PolD) is the representative member of the D family of DNA polymerases. It is an archaea-specific DNA polymerase required for replication and unrelated to other known DNA polymerases. PolD consists of a heterodime
Externí odkaz:
https://doaj.org/article/d2e48c69b22042d58ea2b5bf273cd9c2
Autor:
Sheng-Tao Li, Hiroto Hirayama, Chengcheng Huang, Tsugiyo Matsuda, Ritsuko Oka, Takahiro Yamasaki, Daisuke Kohda, Tadashi Suzuki
Publikováno v:
FEBS Journal; Mar2024, Vol. 291 Issue 5, p884-896, 13p
Autor:
Kyoko Hanawa-Suetsugu, Yuzuru Itoh, Maisarah Ab Fatah, Tamako Nishimura, Kazuhiro Takemura, Kohei Takeshita, Satoru Kubota, Naoyuki Miyazaki, Wan Nurul Izzati Wan Mohamad Noor, Takehiko Inaba, Nhung Thi Hong Nguyen, Sayaka Hamada-Nakahara, Kayoko Oono-Yakura, Masashi Tachikawa, Kenji Iwasaki, Daisuke Kohda, Masaki Yamamoto, Akio Kitao, Atsushi Shimada, Shiro Suetsugu
Publikováno v:
Nature Communications, Vol 10, Iss 1, Pp 1-13 (2019)
The Bin/Amphiphysin/Rvs167 (BAR) domain superfamily, which includes FCH-BAR (F-BAR) domain proteins are membrane-sculpting proteins. Here the authors combine a range of techniques and show that the F-BAR domain of growth-arrest specific protein 7 (GA
Externí odkaz:
https://doaj.org/article/e2ed47610d894146b620955e644b5a77
Autor:
Takahiro Yamasaki, Daisuke Kohda
Publikováno v:
Bio-Protocol, Vol 9, Iss 5 (2019)
Glycosylation of asparagine residues is widespread in Eukarya, and occurs in virtually all Archaea and some eubacterial species. A membrane-bound enzyme, oligosaccharyltransferase, catalyzes the transfer of an oligosaccharide chain from a sugar donor
Externí odkaz:
https://doaj.org/article/f40c3f0b5e2947c99d704049e2cb3075
Publikováno v:
The Journal of Physical Chemistry Letters. 12:10551-10557
The characterization of the transition state is a central issue in biophysical studies of protein folding. NMR is a multiprobe measurement technique that provides residue-specific information. Here, we used exchange spectroscopy to characterize the t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1528568e988a83ff2fae8d27071223fb
https://doi.org/10.1021/acs.jpclett.1c02387
https://doi.org/10.1021/acs.jpclett.1c02387
The consistency principle represents a physicochemical condition requisite for ideal protein folding. The consistency principle assumes that any pair of amino acid residues in partially folded structures has an attractive short-range interactiononly
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::b0fb396c4e530b93eef3334bfc894c1f
https://doi.org/10.1101/2022.10.24.513469
https://doi.org/10.1101/2022.10.24.513469
