Author Correction: Rewiring of the 3D genome during acquisition of carboplatin resistance in a triple-negative breast cancer patient-derived xenograft.

Autor: Dozmorov MG; Department of Biostatistics, Virginia Commonwealth University, Richmond, VA, 23298, USA. Mikhail.Dozmorov@vcuhealth.org.; Department of Pathology, Virginia Commonwealth University, Richmond, VA, 23284, USA. Mikhail.Dozmorov@vcuhealth.org., Marshall MA; Department of Biostatistics, Virginia Commonwealth University, Richmond, VA, 23298, USA., Rashid NS; Department of Pathology, Virginia Commonwealth University, Richmond, VA, 23284, USA.; Department of Biology, University of Richmond, Richmond, VA, 23173, USA., Grible JM; Department of Pathology, Virginia Commonwealth University, Richmond, VA, 23284, USA., Valentine A; Department of Pathology, Virginia Commonwealth University, Richmond, VA, 23284, USA.; Department of Biochemistry, Virginia Commonwealth University, Richmond, VA, 23284, USA., Olex AL; C. Kenneth and Dianne Wright Center for Clinical and Translational Research, Virginia Commonwealth University, Richmond, VA, 23298, USA., Murthy K; Center for Cancer Immunotherapy and Autoimmunity, La Jolla Institute for Immunology, La Jolla, CA, 92037, USA., Chakraborty A; Center for Cancer Immunotherapy and Autoimmunity, La Jolla Institute for Immunology, La Jolla, CA, 92037, USA., Reyna J; Center for Cancer Immunotherapy and Autoimmunity, La Jolla Institute for Immunology, La Jolla, CA, 92037, USA., Figueroa DS; Center for Cancer Immunotherapy and Autoimmunity, La Jolla Institute for Immunology, La Jolla, CA, 92037, USA., Hinojosa-Gonzalez L; Center for Cancer Immunotherapy and Autoimmunity, La Jolla Institute for Immunology, La Jolla, CA, 92037, USA., Da-Inn Lee E; Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI, 53792, USA., Baur BA; Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI, 53792, USA., Roy S; Wisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI, 53715, USA.; Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI, 53792, USA., Ay F; Center for Cancer Immunotherapy and Autoimmunity, La Jolla Institute for Immunology, La Jolla, CA, 92037, USA.; Department of Pediatrics, UC San Diego-School of Medicine, La Jolla, CA, 92093, USA., Harrell JC; Department of Pathology, Virginia Commonwealth University, Richmond, VA, 23284, USA. Joshua.Harrell@vcuhealth.org.

Publikováno v: Scientific reports [Sci Rep] 2024 Dec 17; Vol. 14 (1), pp. 30519. Date of Electronic Publication: 2024 Dec 17.

Publisher Correction: Rewiring of the 3D genome during acquisition of carboplatin resistance in a triple-negative breast cancer patient-derived xenograft

Autor: Mikhail G. Dozmorov, Maggie A. Marshall, Narmeen S. Rashid, Jacqueline M. Grible, Aaron Valentine, Amy L. Olex, Kavita Murthy, Abhijit Chakraborty, Joaquin Reyna, Daniela Salgado Figueroa, Laura Hinojosa-Gonzalez, Erika Da-Inn Lee, Brittany A. Baur, Sushmita Roy, Ferhat Ay, J. Chuck Harrell

Publikováno v: Scientific Reports, Vol 13, Iss 1, Pp 1-1 (2023)

Externí odkaz: https://doaj.org/article/ed83317c818d4ca79037b717b2aa6388

Abstract P1-13-23: Carboplatin resistance-associated changes in the 3D chromatin landscape of a triple-negative breast cancer Patient-Derived Xenograft

Autor: Mikhail Dozmorov, Maggie Marshall, Narmeen Rashid, Jacqueline Grible, Aaron D. Valentine, Amy Olex, Kavita Murthy, Abhijit Chakraborty, Joaquin Reyna, Daniela Salgado Figueroa, Da-Inn Lee, Brittany Baur, Sushmita Roy, Ferhat Ay, Chuck Harrell

Publikováno v: Cancer Research. 83:P1-13

Changes in the three-dimensional (3D) structure of the genome are an emerging hallmark of cancer. Cancer-associated copy number variants and single nucleotide polymorphisms promote rewiring of chromatin loops, disruption of topologically associating

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::c425fed5d5b7be6c8a228213f30da465
https://doi.org/10.1158/1538-7445.sabcs22-p1-13-23

Publisher Correction: Rewiring of the 3D genome during acquisition of carboplatin resistance in a triple-negative breast cancer patient-derived xenograft.

Autor: Dozmorov MG; Department of Biostatistics, Virginia Commonwealth University, Richmond, VA, 23298, USA. Mikhail.Dozmorov@vcuhealth.org.; Department of Pathology, Virginia Commonwealth University, Richmond, VA, 23284, USA. Mikhail.Dozmorov@vcuhealth.org., Marshall MA; Department of Biostatistics, Virginia Commonwealth University, Richmond, VA, 23298, USA., Rashid NS; Department of Pathology, Virginia Commonwealth University, Richmond, VA, 23284, USA.; Department of Biology, University of Richmond, Richmond, VA, 23173, USA., Grible JM; Department of Pathology, Virginia Commonwealth University, Richmond, VA, 23284, USA., Valentine A; Department of Pathology, Virginia Commonwealth University, Richmond, VA, 23284, USA.; Department of Biochemistry, Virginia Commonwealth University, Richmond, VA, 23284, USA., Olex AL; C. Kenneth and Dianne Wright Center for Clinical and Translational Research, Virginia Commonwealth University, Richmond, VA, 23298, USA., Murthy K; Center for Cancer Immunotherapy and Autoimmunity, La Jolla Institute for Immunology, La Jolla, CA, 92037, USA., Chakraborty A; Center for Cancer Immunotherapy and Autoimmunity, La Jolla Institute for Immunology, La Jolla, CA, 92037, USA., Reyna J; Center for Cancer Immunotherapy and Autoimmunity, La Jolla Institute for Immunology, La Jolla, CA, 92037, USA., Figueroa DS; Center for Cancer Immunotherapy and Autoimmunity, La Jolla Institute for Immunology, La Jolla, CA, 92037, USA., Hinojosa-Gonzalez L; Center for Cancer Immunotherapy and Autoimmunity, La Jolla Institute for Immunology, La Jolla, CA, 92037, USA., Da-Inn Lee E; Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI, 53792, USA., Baur BA; Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI, 53792, USA., Roy S; Wisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI, 53715, USA.; Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI, 53792, USA., Ay F; Center for Cancer Immunotherapy and Autoimmunity, La Jolla Institute for Immunology, La Jolla, CA, 92037, USA.; Department of Pediatrics, UC San Diego-School of Medicine, La Jolla, CA, 92093, USA., Harrell JC; Department of Pathology, Virginia Commonwealth University, Richmond, VA, 23284, USA. Joshua.Harrell@vcuhealth.org.

Publikováno v: Scientific reports [Sci Rep] 2023 May 09; Vol. 13 (1), pp. 7522. Date of Electronic Publication: 2023 May 09.

Additional file 4 of GRiNCH: simultaneous smoothing and detection of topological units of genome organization from sparse chromatin contact count matrices with matrix factorization

Autor: Da-Inn Lee, Roy, Sushmita

Additional file 4 Review history

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c14ae5ea5924b1d57ce88f247897d8c6