Revisiting the Briggs Ancient DNA Damage Model: A Fast Maximum Likelihood Method to Estimate Post-Mortem Damage.

Autor: Zhao L; School of Ecological and Environmental Sciences, East China Normal University, Shanghai, China.; Section for GeoGenetics, Globe Institute, University of Copenhagen, Copenhagen K, Denmark., Henriksen RA; Section for GeoGenetics, Globe Institute, University of Copenhagen, Copenhagen K, Denmark., Ramsøe A; Section for GeoGenetics, Globe Institute, University of Copenhagen, Copenhagen K, Denmark., Nielsen R; Section for GeoGenetics, Globe Institute, University of Copenhagen, Copenhagen K, Denmark.; Department of Integrative Biology and Department of Statistics, University of California, Berkeley, California, USA., Korneliussen TS; Section for GeoGenetics, Globe Institute, University of Copenhagen, Copenhagen K, Denmark.

Publikováno v: Molecular ecology resources [Mol Ecol Resour] 2025 Jan; Vol. 25 (1), pp. e14029. Date of Electronic Publication: 2024 Oct 21.

Unraveling the ancient fungal DNA from the Iceman gut.

Autor: Oskolkov N; Department of Biology, Science for Life Laboratory, National Bioinformatics Infrastructure Sweden, Lund University, Lund, Sweden. nikolay.oskolkov@scilifelab.se., Sandionigi A; Department of Informatics, Systems and Communication, University of Milan-Bicocca, Milan, Italy.; Quantia Consulting Srl, Milan, Italy., Götherström A; Centre for Palaeogenetics, Department of Archaeology and Classical Studies, Stockholm University, Stockholm, Sweden., Canini F; Department of Ecological and Biological Sciences, University of Tuscia, 01100, Viterbo, Italy., Turchetti B; Department of Agricultural, Food and Environmental Sciences, University of Perugia, Perugia, Italy., Zucconi L; Department of Ecological and Biological Sciences, University of Tuscia, 01100, Viterbo, Italy., Mimmo T; Faculty of Agricultural, Environmental and Food Sciences, Free University of Bozen-Bolzano, Piazza Università 5, Bolzano, Italy., Buzzini P; Department of Agricultural, Food and Environmental Sciences, University of Perugia, Perugia, Italy., Borruso L; Faculty of Agricultural, Environmental and Food Sciences, Free University of Bozen-Bolzano, Piazza Università 5, Bolzano, Italy. luigimaria.borruso@unibz.it.

Publikováno v: BMC genomics [BMC Genomics] 2024 Dec 19; Vol. 25 (1), pp. 1225. Date of Electronic Publication: 2024 Dec 19.

The Once and Future Fish: Assessing a Millennium of Atlantic Herring Exploitation Through Mixed-Stock Analysis and Ancient DNA.

Autor: Atmore LM; Centre for Ecological and Evolutionary Synthesis, Institute of Biosciences, University of Oslo, Oslo, Norway.; Department of Anthropology, University of British Columbia, Vancouver, British Columbia, Canada., van der Jagt I; Cultural Heritage Agency of the Netherlands, Amersfoort, The Netherlands., Boilard A; Centre for Ecological and Evolutionary Synthesis, Institute of Biosciences, University of Oslo, Oslo, Norway., Häberle S; Integrative Prehistory and Archaeological Science, Department of Environmental Sciences, Basel University, Basel, Switzerland., Blevis R; Department of Archaeology, University of Cambridge, Cambridge, UK., Dierickx K; Department of Archaeology and Cultural History, NTNU University Museum, Norwegian University of Science and Technology (NTNU), Trondheim, Norway.; Department of Archaeology, University of York, York, UK., Quinlan LM; Department of Archaeology, University of York, York, UK., Orton DC; Department of Archaeology, University of York, York, UK., Hufthammer AK; Department of Archaeology, University of Bergen, Bergen, Norway., Barrett JH; Department of Archaeology and Cultural History, NTNU University Museum, Norwegian University of Science and Technology (NTNU), Trondheim, Norway., Star B; Centre for Ecological and Evolutionary Synthesis, Institute of Biosciences, University of Oslo, Oslo, Norway.

Publikováno v: Global change biology [Glob Chang Biol] 2024 Dec; Vol. 30 (12), pp. e70010.

Filtering out the noise: metagenomic classifiers optimize ancient DNA mapping.

Autor: Ravishankar S; Australian Centre for Ancient DNA (ACAD) and The Environment Institute, The School of Biological Sciences, University of Adelaide, Adelaide, SA, Australia., Perez V; Australian Centre for Ancient DNA (ACAD) and The Environment Institute, The School of Biological Sciences, University of Adelaide, Adelaide, SA, Australia.; Centre of Excellence for Australian Biodiversity and Heritage, University of Adelaide, Adelaide, SA, Australia., Davidson R; Australian Centre for Ancient DNA (ACAD) and The Environment Institute, The School of Biological Sciences, University of Adelaide, Adelaide, SA, Australia., Roca-Rada X; Australian Centre for Ancient DNA (ACAD) and The Environment Institute, The School of Biological Sciences, University of Adelaide, Adelaide, SA, Australia.; Faculty of Arts and Humanities, University of Coimbra, Coimbra, Portugal., Lan D; Australian Centre for Ancient DNA (ACAD) and The Environment Institute, The School of Biological Sciences, University of Adelaide, Adelaide, SA, Australia.; Genozip Limited, Hong Kong., Souilmi Y; Australian Centre for Ancient DNA (ACAD) and The Environment Institute, The School of Biological Sciences, University of Adelaide, Adelaide, SA, Australia.; National Centre for Indigenous Genomics, Australian National University, Canberra, ACT, Australia.; Indigenous Genomics, Telethon Kids Institute, Adelaide, SA, Australia., Llamas B; Australian Centre for Ancient DNA (ACAD) and The Environment Institute, The School of Biological Sciences, University of Adelaide, Adelaide, SA, Australia.; Centre of Excellence for Australian Biodiversity and Heritage, University of Adelaide, Adelaide, SA, Australia.; National Centre for Indigenous Genomics, Australian National University, Canberra, ACT, Australia.; Indigenous Genomics, Telethon Kids Institute, Adelaide, SA, Australia.

Publikováno v: Briefings in bioinformatics [Brief Bioinform] 2024 Nov 22; Vol. 26 (1).

Ancient DNA challenges prevailing interpretations of the Pompeii plaster casts.

Autor: Pilli E; Dipartimento di Biologia, Università di Firenze, 50122 Florence, Italy., Vai S; Dipartimento di Biologia, Università di Firenze, 50122 Florence, Italy., Moses VC; Department of History, Harvard University, Cambridge, MA 02138, USA; Department of Human Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA., Morelli S; Dipartimento di Biologia, Università di Firenze, 50122 Florence, Italy., Lari M; Dipartimento di Biologia, Università di Firenze, 50122 Florence, Italy., Modi A; Dipartimento di Biologia, Università di Firenze, 50122 Florence, Italy., Diroma MA; Dipartimento di Biologia, Università di Firenze, 50019 Florence, Italy., Amoretti V; Parco Archeologico di Pompei, 80045 Naples, Italy., Zuchtriegel G; Parco Archeologico di Pompei, 80045 Naples, Italy., Osanna M; Ministry of Cultural Heritage and Activities and Tourism, 00197 Rome, Italy., Kennett DJ; Department of Anthropology, University of California, Santa Barbara, Santa Barbara, CA 93106, USA., George RJ; Department of Anthropology, University of California, Santa Barbara, Santa Barbara, CA 93106, USA., Krigbaum J; Department of Anthropology, University of Florida, Gainesville, FL 32611, USA., Rohland N; Department of Genetics, Harvard Medical School, Boston, MA 02115, USA., Mallick S; Department of Genetics, Harvard Medical School, Boston, MA 02115, USA; Howard Hughes Medical Institute (HHMI), Harvard Medical School, Boston, MA 02115, USA; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA., Caramelli D; Dipartimento di Biologia, Università di Firenze, 50122 Florence, Italy. Electronic address: david.caramelli@unifi.it., Reich D; Department of Human Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA; Department of Genetics, Harvard Medical School, Boston, MA 02115, USA; Howard Hughes Medical Institute (HHMI), Harvard Medical School, Boston, MA 02115, USA; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA; Max Planck-Harvard Research Center for the Archaeoscience of the Ancient Mediterranean, 04103 Leipzig, Germany; Max Planck-Harvard Research Center for the Archaeoscience of the Ancient Mediterranean, Cambridge, MA 02138, USA. Electronic address: reich@genetics.med.harvard.edu., Mittnik A; Department of Human Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA; Department of Genetics, Harvard Medical School, Boston, MA 02115, USA; Max Planck-Harvard Research Center for the Archaeoscience of the Ancient Mediterranean, 04103 Leipzig, Germany; Max Planck-Harvard Research Center for the Archaeoscience of the Ancient Mediterranean, Cambridge, MA 02138, USA; Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany. Electronic address: alissa_mittnik@eva.mpg.de.

Publikováno v: Current biology : CB [Curr Biol] 2024 Nov 18; Vol. 34 (22), pp. 5307-5318.e7. Date of Electronic Publication: 2024 Nov 07.