Genome-Wide Identification, Expression and Interaction Analysis of ARF and AUX/IAA Gene Family in Soybean

Autor: Shahid Ali, Wanpeng Wang, Zhaohan Zhang, Linan Xie, D. Roeland Boer, Naeem Khan

Publikováno v: Frontiers in Bioscience-Landmark, Vol 27, Iss 8, p 251 (2022)

Background: The plant hormones auxin affects most aspects of plant growth and development. The auxin transport and signaling are regulated by different factors that modulate plant morphogenesis and respond to external environments. The modulation of

Externí odkaz: https://doaj.org/article/efb0e4ddf66e41d78678e93e4fc4091f

A tetramerization domain in prokaryotic and eukaryotic transcription regulators homologous to p53

Autor: Nerea Bernardo, Isidro Crespo, Anna Cuppari, Wilfried J. J. Meijer, D. Roeland Boer

Publikováno v: Acta Crystallographica Section D Structural Biology. 79:259-267

Transcriptional regulation usually requires the action of several proteins that either repress or activate a promotor of an open reading frame. These proteins can counteract each other, thus allowing tight regulation of the transcription of the corre

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::76b5e8f781f8793b151ce037459e36ee
https://doi.org/10.1107/s2059798323001298

Structures of pMV158 replication initiator RepB with and without DNA reveal a flexible dual-function protein

Autor: Cristina Machón, José A Ruiz-Masó, Juliana Amodio, D Roeland Boer, Lorena Bordanaba-Ruiseco, Katarzyna Bury, Igor Konieczny, Gloria del Solar, Miquel Coll

15 p.-6 fig.1 graph. abst.
DNA replication is essential to all living organisms as it ensures the fidelity of genetic material for the next generation of dividing cells. One of the simplest replication initiation mechanisms is the rolling circle

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ffc0ecd80ded9cc49f9e5da991a9eab9
http://hdl.handle.net/2445/200288

Architecture of DNA elements mediating ARF transcription factor binding and auxin-responsive gene expression in Arabidopsis

Autor: Simon Lindhoud, Isidro Crespo, Elmar van der Wijk, Dolf Weijers, Victor G. Levitsky, Mattia Fontana, Victoria V. Mironova, Yana Sizentsova, D. Roeland Boer, Keita Tanaka, Johannes Hohlbein, Alejandra Freire-Rios

Publikováno v: Proceedings of the National Academy of Sciences of the United States of America 117 (2020) 39
Proceedings of the National Academy of Sciences of the United States of America, 117(39), 24557-24566
Proceedings of the National Academy of Sciences of the United States of America

Significance The plant hormone auxin controls many aspects of growth and development. It does so by changing the activity of AUXIN RESPONSE FACTOR (ARF) proteins that recognize specific DNA elements in plant genes and switch gene expression on or off

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d6098cb5549086acc8a1f221d6bd78d3
https://doi.org/10.1073/pnas.2009554117

Structural and biochemical characterization of the relaxosome auxiliary proteins encoded on the

Autor: Isidro, Crespo, Nerea, Bernardo, Anna, Cuppari, Barbara M, Calisto, Jorge, Val-Calvo, Andrés, Miguel-Arribas, Wilfried J J, Meijer, Xavi, Carpena, Fernando, Gil-Ortiz, Marc, Malfois, D Roeland, Boer

Publikováno v: Computational and structural biotechnology journal. 20

Bacterial conjugation is an important route for horizontal gene transfer. The initial step in this process involves a macromolecular protein-DNA complex called the relaxosome, which in plasmids consists of the origin of transfer (

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::2856dedbf365a52b2e852b7576b3ef7d
https://pubmed.ncbi.nlm.nih.gov/35198129