Zobrazeno 1 - 10
of 157
pro vyhledávání: '"D, Shank"'
Autor:
Melissa Rincon-Sandoval, Rishi De-Kayne, Stephen D. Shank, Stacy Pirro, Alfred Ko’ou, Linelle Abueg, Alan Tracey, Jackie Mountcastle, Brian O’Toole, Jennifer Balacco, Giulio Formenti, Erich D. Jarvis, Dahiana Arcila, Sergei L. Kosakovsky Pond, Aaron Davis, Devin D. Bloom, Ricardo Betancur-R
Publikováno v:
Nature Communications, Vol 15, Iss 1, Pp 1-15 (2024)
Abstract Habitat transitions have shaped the evolutionary trajectory of many clades. Sea catfishes (Ariidae) have repeatedly undergone ecological transitions, including colonizing freshwaters from marine environments, leading to an adaptive radiation
Externí odkaz:
https://doaj.org/article/94d7d6badae4477888b08089ebcb2c77
Autor:
Jordan D. Zehr, Sergei L. Kosakovsky Pond, Stephen D. Shank, Holly McQueary, Jennifer K. Grenier, Gary R. Whittaker, Michael J. Stanhope, Laura B. Goodman
Publikováno v:
Microbiology Spectrum, Vol 12, Iss 11 (2024)
ABSTRACT There are several examples of coronaviruses in the Betacoronavirus subgenus Embecovirus that have jumped from an animal to the human host. Studying how evolutionary factors shape coronaviruses in non-human hosts may provide insight into the
Externí odkaz:
https://doaj.org/article/9314bfd05ef54dbb8ff850dff370a0ea
Autor:
Aysam Guerler, Dannon Baker, Marius van den Beek, Bjoern Gruening, Dave Bouvier, Nate Coraor, Stephen D. Shank, Jordan D. Zehr, Michael C. Schatz, Anton Nekrutenko
Publikováno v:
BMC Bioinformatics, Vol 24, Iss 1, Pp 1-13 (2023)
Abstract Background Protein–protein interactions play a crucial role in almost all cellular processes. Identifying interacting proteins reveals insight into living organisms and yields novel drug targets for disease treatment. Here, we present a pu
Externí odkaz:
https://doaj.org/article/02770213d40246049a08d1048a98d4a6
Autor:
Joel O. Wertheim, Jade C. Wang, Mindy Leelawong, Darren P. Martin, Jennifer L. Havens, Moinuddin A. Chowdhury, Jonathan E. Pekar, Helly Amin, Anthony Arroyo, Gordon A. Awandare, Hoi Yan Chow, Edimarlyn Gonzalez, Elizabeth Luoma, Collins M. Morang’a, Anton Nekrutenko, Stephen D. Shank, Stefan Silver, Peter K. Quashie, Jennifer L. Rakeman, Victoria Ruiz, Lucia V. Torian, Tetyana I. Vasylyeva, Sergei L. Kosakovsky Pond, Scott Hughes
Publikováno v:
Nature Communications, Vol 13, Iss 1, Pp 1-11 (2022)
Here, the authors characterize a case of SARS-CoV-2 superinfection with Alpha and Epsilon variants, in which, via full genome sequencing analyses, they identify recombinant haplotypes in the spike, nucleocapsid, and ORF 8 coding regions, suggesting r
Externí odkaz:
https://doaj.org/article/c258b0e47c8e46188ea0732ebd024c24
Publikováno v:
BMC Evolutionary Biology, Vol 20, Iss 1, Pp 1-20 (2020)
Abstract Background Understanding the origins of genome content has long been a goal of molecular evolution and comparative genomics. By examining genome evolution through the guise of lineage-specific evolution, it is possible to make inferences abo
Externí odkaz:
https://doaj.org/article/533c346eef7c4160ba034af1d99b1a83
Autor:
Alexander G Lucaci, Jordan D Zehr, Stephen D Shank, Dave Bouvier, Alexander Ostrovsky, Han Mei, Anton Nekrutenko, Darren P Martin, Sergei L Kosakovsky Pond
Publikováno v:
PLoS ONE, Vol 17, Iss 11, p e0275623 (2022)
An important unmet need revealed by the COVID-19 pandemic is the near-real-time identification of potentially fitness-altering mutations within rapidly growing SARS-CoV-2 lineages. Although powerful molecular sequence analysis methods are available t
Externí odkaz:
https://doaj.org/article/bca1a56d05294988afd66598cded39bb
Autor:
Alexander G Lucaci, Sadie R Wisotsky, Stephen D Shank, Steven Weaver, Sergei L Kosakovsky Pond
Publikováno v:
PLoS ONE, Vol 16, Iss 3, p e0248337 (2021)
Despite many attempts to introduce evolutionary models that permit substitutions to instantly alter more than one nucleotide in a codon, the prevailing wisdom remains that such changes are rare and generally negligible or are reflective of non-biolog
Externí odkaz:
https://doaj.org/article/8c1c63c09e00483a8808e2e2339075da
Publikováno v:
BMC Bioinformatics, Vol 19, Iss 1, Pp 1-5 (2018)
Abstract Background While several JavaScript packages for visualizing phylogenetic trees exist, most are best characterized as frameworks that are designed with a specific set of tasks in mind. Extending such packages to use cases that are not availa
Externí odkaz:
https://doaj.org/article/083f58dada73412a8e1b4a574bdb7584
Autor:
Jordan D Zehr, Sergei L Kosakovsky Pond, Jean K Millet, Ximena A Olarte-Castillo, Alexander G Lucaci, Stephen D Shank, Kristina M Ceres, Annette Choi, Gary R Whittaker, Laura B Goodman, Michael J Stanhope
Feline coronaviruses (FCoVs) commonly cause mild enteric infections in felines worldwide (termed feline enteric coronavirus [FECV]), with around 12 per cent developing into deadly feline infectious peritonitis (FIP; feline infectious peritonitis viru
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d683545c570de0086cf6f6aec59fbbf6
https://doi.org/10.1101/2023.01.11.523607
https://doi.org/10.1101/2023.01.11.523607
Autor:
Robin C. Han, Suzi Naguib, Christopher K. Owen, Lindsay R. Druskin, Kelsey R. Keen, Rachel Piper, Samantha N. Holbert, Sophia D. Shank, Erinn J. Victory, Cheryl B. McNeil
Publikováno v:
Evidence-Based Practice in Child and Adolescent Mental Health. 7:125-141
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::732539c613445ed3143dda30c3b8f519
https://doi.org/10.1080/23794925.2021.1993109
https://doi.org/10.1080/23794925.2021.1993109