Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements.

Autor: Baranasic D; MRC London Institute of Medical Sciences, London, UK.; Institute of Clinical Sciences, Faculty of Medicine, Imperial College London, Hammersmith Hospital Campus, London, UK., Hörtenhuber M; Department of Biosciences and Nutrition, Karolinska Institutet, NEO, Huddinge, Sweden., Balwierz PJ; MRC London Institute of Medical Sciences, London, UK.; Institute of Clinical Sciences, Faculty of Medicine, Imperial College London, Hammersmith Hospital Campus, London, UK.; Institute of Cancer and Genomic Sciences, Birmingham Centre for Genome Biology, College of Medical and Dental Sciences, University of Birmingham, Birmingham, UK., Zehnder T; MRC London Institute of Medical Sciences, London, UK.; Institute of Clinical Sciences, Faculty of Medicine, Imperial College London, Hammersmith Hospital Campus, London, UK.; Max Planck Institute for Molecular Genetics, Department of Computational Molecular Biology, Berlin, Germany., Mukarram AK; Department of Biosciences and Nutrition, Karolinska Institutet, NEO, Huddinge, Sweden., Nepal C; Biotech Research and Innovation Centre (BRIC), Department of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark., Várnai C; Institute of Cancer and Genomic Sciences, Birmingham Centre for Genome Biology, College of Medical and Dental Sciences, University of Birmingham, Birmingham, UK.; Centre for Computational Biology, University of Birmingham, Birmingham, UK., Hadzhiev Y; Institute of Cancer and Genomic Sciences, Birmingham Centre for Genome Biology, College of Medical and Dental Sciences, University of Birmingham, Birmingham, UK., Jimenez-Gonzalez A; Institute of Cancer and Genomic Sciences, Birmingham Centre for Genome Biology, College of Medical and Dental Sciences, University of Birmingham, Birmingham, UK., Li N; Institute of Cancer and Genomic Sciences, Birmingham Centre for Genome Biology, College of Medical and Dental Sciences, University of Birmingham, Birmingham, UK., Wragg J; Institute of Cancer and Genomic Sciences, Birmingham Centre for Genome Biology, College of Medical and Dental Sciences, University of Birmingham, Birmingham, UK., D'Orazio FM; Institute of Cancer and Genomic Sciences, Birmingham Centre for Genome Biology, College of Medical and Dental Sciences, University of Birmingham, Birmingham, UK., Relic D; Biozentrum, University of Basel and Swiss Institute of Bioinformatics, Basel, Switzerland., Pachkov M; Biozentrum, University of Basel and Swiss Institute of Bioinformatics, Basel, Switzerland., Díaz N; Max Planck Institute for Molecular Biomedicine, Muenster, Germany.; Institute of Marine Sciences, Barcelona, Spain., Hernández-Rodríguez B; Max Planck Institute for Molecular Biomedicine, Muenster, Germany., Chen Z; Translational and Functional Genomics Branch, National Human Genome Research Institute, Bethesda, MD, USA.; Southern Marine Science and Engineering Guangdong Laboratory, Guangzhou, China.; CAS Key Laboratory of Tropical Marine Bio-Resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China., Stoiber M; Environmental Genomics & Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Dong M; Department of Biosciences and Nutrition, Karolinska Institutet, NEO, Huddinge, Sweden., Stevens I; Department of Biosciences and Nutrition, Karolinska Institutet, NEO, Huddinge, Sweden., Ross SE; Genomics and Epigenetics Division, Garvan Institute of Medical Research, Sydney, New South Wales, Australia., Eagle A; Institute of Neuroscience, University of Oregon, Eugene, OR, USA., Martin R; Institute of Neuroscience, University of Oregon, Eugene, OR, USA., Obasaju O; Institute of Cancer and Genomic Sciences, Birmingham Centre for Genome Biology, College of Medical and Dental Sciences, University of Birmingham, Birmingham, UK., Rastegar S; Institute of Biological and Chemical Systems - Biological Information Processing (IBCS-BIP), Karlsruhe Institute of Technology, Karlsruhe, Germany., McGarvey AC; Max-Delbrück-Center for Molecular Medicine in the Helmholtz Association (MDC), Berlin Institute for Medical Systems Biology (BIMSB), Berlin, Germany., Kopp W; Max-Delbrück-Center for Molecular Medicine in the Helmholtz Association (MDC), Berlin Institute for Medical Systems Biology (BIMSB), Berlin, Germany., Chambers E; Sheffield Bioinformatics Core, Sheffield Institute of Translational Neuroscience, University of Sheffield, Sheffield, UK., Wang D; Sheffield Bioinformatics Core, Sheffield Institute of Translational Neuroscience, University of Sheffield, Sheffield, UK.; Singapore Institute for Clinical Sciences, Singapore, Singapore., Kim HR; Bateson Centre/Biomedical Science, University of Sheffield, Sheffield, UK., Acemel RD; Centro Andaluz de Biología del Desarrollo (CABD), CSIC-Universidad Pablo de Olavide-Junta de Andalucía, Seville, Spain.; Epigenetics and Sex Development Group, Berlin Institute for Medical Systems Biology, Max-Delbrück Center for Molecular Medicine, Berlin, Germany., Naranjo S; Centro Andaluz de Biología del Desarrollo (CABD), CSIC-Universidad Pablo de Olavide-Junta de Andalucía, Seville, Spain., Łapiński M; International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland., Chong V; MRC Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford, UK., Mathavan S; Vision Research Foundation, Sankara Nethralayas, Chennai, India., Peers B; Laboratory of Zebrafish Development and Disease Models (ZDDM), GIGA-R, SART TILMAN, University of Liège, Liège, Belgium., Sauka-Spengler T; MRC Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford, UK., Vingron M; Max Planck Institute for Molecular Genetics, Department of Computational Molecular Biology, Berlin, Germany., Carninci P; Laboratory for Transcriptome Technology, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.; Fondazione Human Technopole, Milano, Italy., Ohler U; Max-Delbrück-Center for Molecular Medicine in the Helmholtz Association (MDC), Berlin Institute for Medical Systems Biology (BIMSB), Berlin, Germany.; Institute of Biology, Humboldt University, Berlin, Germany., Lacadie SA; Max-Delbrück-Center for Molecular Medicine in the Helmholtz Association (MDC), Berlin Institute for Medical Systems Biology (BIMSB), Berlin, Germany., Burgess SM; Southern Marine Science and Engineering Guangdong Laboratory, Guangzhou, China., Winata C; International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland., van Eeden F; Bateson Centre/Biomedical Science, University of Sheffield, Sheffield, UK., Vaquerizas JM; MRC London Institute of Medical Sciences, London, UK.; Institute of Clinical Sciences, Faculty of Medicine, Imperial College London, Hammersmith Hospital Campus, London, UK.; Max Planck Institute for Molecular Biomedicine, Muenster, Germany., Gómez-Skarmeta JL; Centro Andaluz de Biología del Desarrollo (CABD), CSIC-Universidad Pablo de Olavide-Junta de Andalucía, Seville, Spain., Onichtchouk D; Department of Developmental Biology, Signalling Research Centers BIOSS and CIBSS, University of Freiburg, Freiburg, Germany., Brown BJ; Environmental Genomics & Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Bogdanovic O; Genomics and Epigenetics Division, Garvan Institute of Medical Research, Sydney, New South Wales, Australia.; School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, New South Wales, Australia., van Nimwegen E; Biozentrum, University of Basel and Swiss Institute of Bioinformatics, Basel, Switzerland., Westerfield M; Institute of Neuroscience, University of Oregon, Eugene, OR, USA., Wardle FC; Randall Centre for Cell & Molecular Biophysics, Guy's Campus, King's College London, London, UK., Daub CO; Department of Biosciences and Nutrition, Karolinska Institutet, NEO, Huddinge, Sweden. carsten.daub@ki.se.; Science for Life Laboratory, Solna, Sweden. carsten.daub@ki.se., Lenhard B; MRC London Institute of Medical Sciences, London, UK. b.lenhard@imperial.ac.uk.; Institute of Clinical Sciences, Faculty of Medicine, Imperial College London, Hammersmith Hospital Campus, London, UK. b.lenhard@imperial.ac.uk., Müller F; Institute of Cancer and Genomic Sciences, Birmingham Centre for Genome Biology, College of Medical and Dental Sciences, University of Birmingham, Birmingham, UK. f.mueller@bham.ac.uk.

Publikováno v: Nature genetics [Nat Genet] 2022 Jul; Vol. 54 (7), pp. 1037-1050. Date of Electronic Publication: 2022 Jul 04.

Visualization of Transcriptional Activity in Early Zebrafish Primordial Germ Cells.

Autor: D'Orazio FM; Institute of Cancer and Genomics Sciences, College of Medical and Dental Sciences, University of Birmingham, Birmingham, UK.; MRC London Institute of Medical Sciences and Faculty of Medicine, Imperial College, London, UK.; Institute of Clinical Sciences, Faculty of Medicine, Imperial College, London, UK., Jasiulewicz A; Institute of Cancer and Genomics Sciences, College of Medical and Dental Sciences, University of Birmingham, Birmingham, UK., Hadzhiev Y; Institute of Cancer and Genomics Sciences, College of Medical and Dental Sciences, University of Birmingham, Birmingham, UK., Müller F; Institute of Cancer and Genomics Sciences, College of Medical and Dental Sciences, University of Birmingham, Birmingham, UK. F.Mueller@bham.ac.uk.

Publikováno v: Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2021; Vol. 2218, pp. 185-194.