15 years of introgression studies: quantifying gene flow across Eukaryotes

Autor: Daniel R. Matute, Tate Ad, Heidi Mavengere, Jenn M. Coughlan, D'Agostino Err, David Peede, Andrius J. Dagilis, Jofre Gi

With the rise of affordable next generation sequencing technology, introgression — or the exchange of genetic materials between taxa — is widely perceived to be a ubiquitous phenomenon in nature. Although this claim is supported by several keysto

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::70dd80c3c9359c1c70f3e70ff4622b7e
https://doi.org/10.1101/2021.06.15.448399

A need for standardized reporting of introgression: Insights from studies across eukaryotes.

Autor: Dagilis AJ; Biology Department University of North Carolina Chapel Hill NC USA., Peede D; Biology Department University of North Carolina Chapel Hill NC USA.; Department of Ecology, Evolution, and Organismal Biology Brown University Providence RI USA.; Center for Computational Molecular Biology Brown University Providence RI USA., Coughlan JM; Biology Department University of North Carolina Chapel Hill NC USA.; Department of Ecology and Evolutionary Biology Yale University New Haven CT USA., Jofre GI; Biology Department University of North Carolina Chapel Hill NC USA., D'Agostino ERR; Biology Department University of North Carolina Chapel Hill NC USA.; Department of Ecology and Evolutionary Biology Princeton University Princeton NJ USA., Mavengere H; Biology Department University of North Carolina Chapel Hill NC USA., Tate AD; Biology Department University of North Carolina Chapel Hill NC USA., Matute DR; Biology Department University of North Carolina Chapel Hill NC USA.

Publikováno v: Evolution letters [Evol Lett] 2022 Jul 25; Vol. 6 (5), pp. 344-357. Date of Electronic Publication: 2022 Jul 25 (Print Publication: 2022).

Widespread introgression across a phylogeny of 155 Drosophila genomes.

Autor: Suvorov A; Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA. Electronic address: antony.suvorov@med.unc.edu., Kim BY; Department of Biology, Stanford University, Stanford, CA, USA., Wang J; Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA., Armstrong EE; Department of Biology, Stanford University, Stanford, CA, USA., Peede D; Department of Biology, University of North Carolina, Chapel Hill, NC 27599, USA., D'Agostino ERR; Department of Biology, University of North Carolina, Chapel Hill, NC 27599, USA., Price DK; School of Life Sciences, University of Nevada, Las Vegas, NV 89119, USA., Waddell P; School of Fundamental Sciences, Massey University, Palmerston North 4442, New Zealand., Lang M; CNRS, Institut Jacques Monod, Université de Paris, Paris 75013, France., Courtier-Orgogozo V; CNRS, Institut Jacques Monod, Université de Paris, Paris 75013, France., David JR; Laboratoire Evolution, Génomes, Comportement, Ecologie (EGCE) CNRS, IRD, Univ. Paris-sud, Université Paris-Saclay, Gif sur Yvette 91190, France; Institut de Systématique, Evolution, Biodiversité, CNRS, MNHN, UPMC, EPHE, Muséum National d'Histoire Naturelle, Sorbonne Universités, Paris 75005, France., Petrov D; Department of Biology, Stanford University, Stanford, CA, USA., Matute DR; Department of Biology, University of North Carolina, Chapel Hill, NC 27599, USA., Schrider DR; Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA., Comeault AA; Molecular Ecology & Evolution Group, School of Natural Sciences, Bangor University, Bangor, Gwynedd LL57 2DGA, UK. Electronic address: a.comeault@bangor.ac.uk.

Publikováno v: Current biology : CB [Curr Biol] 2022 Jan 10; Vol. 32 (1), pp. 111-123.e5. Date of Electronic Publication: 2021 Nov 16.

Highly contiguous assemblies of 101 drosophilid genomes.

Autor: Kim BY; Department of Biology, Stanford University, Stanford, United States., Wang JR; Department of Genetics, University of North Carolina, Chapel Hill, United States., Miller DE; Department of Pediatrics, Division of Genetic Medicine, University of Washington and Seattle Children's Hospital, Seattle, United States., Barmina O; Department of Evolution and Ecology, University of California Davis, Davis, United States., Delaney E; Department of Evolution and Ecology, University of California Davis, Davis, United States., Thompson A; Department of Evolution and Ecology, University of California Davis, Davis, United States., Comeault AA; School of Natural Sciences, Bangor University, Bangor, United Kingdom., Peede D; Biology Department, University of North Carolina, Chapel Hill, United States., D'Agostino ERR; Biology Department, University of North Carolina, Chapel Hill, United States., Pelaez J; Department of Integrative Biology, University of California, Berkeley, Berkeley, United States., Aguilar JM; Department of Integrative Biology, University of California, Berkeley, Berkeley, United States., Haji D; Department of Integrative Biology, University of California, Berkeley, Berkeley, United States., Matsunaga T; Department of Integrative Biology, University of California, Berkeley, Berkeley, United States., Armstrong EE; Department of Biology, Stanford University, Stanford, United States., Zych M; Molecular and Cellular Biology Program, University of Washington, Seattle, United States., Ogawa Y; Department of Biological Sciences, Tokyo Metropolitan University, Hachioji, Japan., Stamenković-Radak M; Faculty of Biology, University of Belgrade, Belgrade, Serbia., Jelić M; Faculty of Biology, University of Belgrade, Belgrade, Serbia., Veselinović MS; Faculty of Biology, University of Belgrade, Belgrade, Serbia., Tanasković M; University of Belgrade, Institute for Biological Research 'Siniša Stanković', National Institute of Republic of Serbia, Belgrade, Serbia., Erić P; University of Belgrade, Institute for Biological Research 'Siniša Stanković', National Institute of Republic of Serbia, Belgrade, Serbia., Gao JJ; School of Ecology and Environmental Science, Yunnan University, Kunming, China., Katoh TK; School of Ecology and Environmental Science, Yunnan University, Kunming, China., Toda MJ; Hokkaido University Museum, Hokkaido University, Sapporo, Japan., Watabe H; Biological Laboratory, Sapporo College, Hokkaido University of Education, Sapporo, Japan., Watada M; Graduate School of Science and Engineering, Ehime University, Matsuyama, Japan., Davis JS; Department of Biology, University of Kentucky, Lexington, United States., Moyle LC; Department of Biology, Indiana University, Bloomington, United States., Manoli G; Neurobiology and Genetics, Theodor Boveri Institute, Biocentre, University of Würzburg, Würzburg, Germany., Bertolini E; Neurobiology and Genetics, Theodor Boveri Institute, Biocentre, University of Würzburg, Würzburg, Germany., Košťál V; Institute of Entomology, Biology Centre, Academy of Sciences of the Czech Republic, Prague, Czech Republic., Hawley RS; Department of Molecular and Integrative Physiology, University of Kansas Medical Center, Stowers Institute for Medical Research, Kansas City, United States., Takahashi A; Department of Biological Sciences, Tokyo Metropolitan University, Hachioji, Japan., Jones CD; Biology Department, University of North Carolina, Chapel Hill, United States., Price DK; School of Life Science, University of Nevada, Las Vegas, United States., Whiteman N; Department of Integrative Biology, University of California, Berkeley, Berkeley, United States., Kopp A; Department of Evolution and Ecology, University of California Davis, Davis, United States., Matute DR; Biology Department, University of North Carolina, Chapel Hill, United States., Petrov DA; Department of Biology, Stanford University, Stanford, United States.

Publikováno v: ELife [Elife] 2021 Jul 19; Vol. 10. Date of Electronic Publication: 2021 Jul 19.