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of 140
pro vyhledávání: '"Czauderna, Tobias"'
Ontologies are formal representations of concepts and complex relationships among them. They have been widely used to capture comprehensive domain knowledge in areas such as biology and medicine, where large and complex ontologies can contain hundred
Externí odkaz:
http://arxiv.org/abs/1908.00688
Autor:
Aichem Michael, Klein Karsten, Czauderna Tobias, Garkov Dimitar, Zhao Jinxin, Li Jian, Schreiber Falk
Publikováno v:
Journal of Integrative Bioinformatics, Vol 19, Iss 4, Pp 17410-6 (2022)
Biomolecular networks, including genome-scale metabolic models (GSMMs), assemble the knowledge regarding the biological processes that happen inside specific organisms in a way that allows for analysis, simulation, and exploration. With the increasin
Externí odkaz:
https://doaj.org/article/a9c6c014e0b14dad9c63a79cf2639669
Akademický článek
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Autor:
Schreiber Falk, Czauderna Tobias
Publikováno v:
Journal of Integrative Bioinformatics, Vol 19, Iss 2, Pp S56-68 (2022)
Visual representations are commonly used to explore, analyse, and communicate information and knowledge in systems biology and beyond. Such visualisations not only need to be accurate but should also be aesthetically pleasing and informative. Using t
Externí odkaz:
https://doaj.org/article/f5d1f13d1112447d980af2c13fcd61c3
Autor:
Dwyer, Tim, Cordeil, Maxime, Czauderna, Tobias, Delir Haghighi, Pari, Ens, Barrett, Goodwin, Sarah, Jenny, Bernhard, Marriott, Kim, Wybrow, Michael
Publikováno v:
In Visual Informatics December 2020 4(4):41-49
Autor:
Schreiber Falk, Sommer Björn, Czauderna Tobias, Golebiewski Martin, Gorochowski Thomas E., Hucka Michael, Keating Sarah M., König Matthias, Myers Chris, Nickerson David, Waltemath Dagmar
Publikováno v:
Journal of Integrative Bioinformatics, Vol 17, Iss 2-3, Pp 19-95 (2020)
This special issue of the Journal of Integrative Bioinformatics presents papers related to the 10th COMBINE meeting together with the annual update of COMBINE standards in systems and synthetic biology.
Externí odkaz:
https://doaj.org/article/4dd202fbd39143c0b5fa861a1b78e0f0
Autor:
Büchel, Finja, Rodriguez, Nicolas, Swainston, Neil, Wrzodek, Clemens, Czauderna, Tobias, Keller, Roland, Mittag, Florian, Schubert, Michael, Glont, Mihai, Golebiewski, Martin, van Iersel, Martijn, Keating, Sarah, Rall, Matthias, Wybrow, Michael, Hermjakob, Henning, Hucka, Michael, Kell, Douglas B., Müller, Wolfgang, Mendes, Pedro, Zell, Andreas, Chaouiya, Claudine, Saez-Rodriguez, Julio, Schreiber, Falk, Laibe, Camille, Dräger, Andreas, Novère, Nicolas Le
Publikováno v:
BMC Systems Biology 2013, 7:116
Background: Systems biology projects and omics technologies have led to a growing number of biochemical pathway reconstructions. However, mathematical models are still most often created de novo, based on reading the literature and processing pathway
Externí odkaz:
http://arxiv.org/abs/1307.7005
Akademický článek
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Autor:
Klapperstueck, Matthias, Czauderna, Tobias, Goncu, Cagatay, Glowacki, Jaroslaw, Dwyer, Tim, Schreiber, Falk, Marriott, Kim
Publikováno v:
In Journal of Visual Languages and Computing June 2018 46:35-42
Autor:
Bergmann Frank T., Czauderna Tobias, Dogrusoz Ugur, Rougny Adrien, Dräger Andreas, Touré Vasundra, Mazein Alexander, Blinov Michael L., Luna Augustin
Publikováno v:
Journal of Integrative Bioinformatics, Vol 17, Iss 2-3 (2020)
This document defines Version 0.3 Markup Language (ML) support for the Systems Biology Graphical Notation (SBGN), a set of three complementary visual languages developed for biochemists, modelers, and computer scientists. SBGN aims at representing ne
Externí odkaz:
https://doaj.org/article/f62318a5df25471a98b3f21d09eb1c76