Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken

Autor: Stephen J. Bush, Lucy Freem, Amanda J. MacCallum, Jenny O’Dell, Chunlei Wu, Cyrus Afrasiabi, Androniki Psifidi, Mark P. Stevens, Jacqueline Smith, Kim M. Summers, David A. Hume

Publikováno v: BMC Genomics, Vol 19, Iss 1, Pp 1-19 (2018)

Abstract Background The domestic chicken (Gallus gallus) is widely used as a model in developmental biology and is also an important livestock species. We describe a novel approach to data integration to generate an mRNA expression atlas for the chic

Externí odkaz: https://doaj.org/article/37c7943d6af743708adf60de70a96b41

A high resolution atlas of gene expression in the domestic sheep (Ovis aries).

Autor: Emily L Clark, Stephen J Bush, Mary E B McCulloch, Iseabail L Farquhar, Rachel Young, Lucas Lefevre, Clare Pridans, Hiu G Tsang, Chunlei Wu, Cyrus Afrasiabi, Mick Watson, C Bruce Whitelaw, Tom C Freeman, Kim M Summers, Alan L Archibald, David A Hume

Publikováno v: PLoS Genetics, Vol 13, Iss 9, p e1006997 (2017)

Sheep are a key source of meat, milk and fibre for the global livestock sector, and an important biomedical model. Global analysis of gene expression across multiple tissues has aided genome annotation and supported functional annotation of mammalian

Externí odkaz: https://doaj.org/article/a0ea1d80013b4ca2af1864599c927f7c

Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken

Autor: David A. Hume, Stephen J. Bush, Jacqueline Smith, Lucy Freem, Jenny O’Dell, Chunlei Wu, Androniki Psifidi, Mark P. Stevens, Kim M. Summers, Cyrus Afrasiabi, Amanda MacCallum

Publikováno v: Bush, S J, Freem, L, MacCallum, A J, O'Dell, J, Wu, C, Afrasiabi, C, Psifidi, A, Stevens, M P, Smith, J, Summers, K M & Hume, D A 2018, ' Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken ', BMC Genomics, vol. 19, no. 1, 594 (2018) . https://doi.org/10.1186/s12864-018-4972-7
BMC Genomics
BMC Genomics, Vol 19, Iss 1, Pp 1-19 (2018)

BackgroundThe domestic chicken (Gallus gallus) is widely used as a model in developmental biology and is also an important livestock species. We describe a novel approach to data integration to generate an mRNA expression atlas for the chicken spanni

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e5e1dc6cd5d8cef6f56c6ef038dc7529
http://ora.ox.ac.uk/objects/uuid:

A high resolution atlas of gene expression in the domestic sheep (Ovis aries)

Autor: Chunlei Wu, Mary E. B. McCulloch, David A. Hume, Mick Watson, Tom C. Freeman, Clare Pridans, Stephen J. Bush, Emily L. Clark, Kim M. Summers, Cyrus Afrasiabi, Hiu-Gwen Tsang, Lucas Lefevre, Bruce Whitelaw, Alan Archibald, Iseabail L. Farquhar, Rachel Young

Publikováno v: Clark, E, Bush, S, McCulloch, M, Farquhar, I, Young, R, Lefevre, L, Pridans, C, Tsang, H, Wu, C, Afrasiabi, C, Watson, M, Whitelaw, C, Freeman, T, Summers, K, Archibald, A & Hume, D 2017, ' A high resolution atlas of gene expression in the domestic sheep (Ovis aries) ', PLoS Genetics, vol. 13, no. 9, e1006997 . https://doi.org/10.1371/journal.pgen.1006997
PLoS Genetics
PLoS Genetics, Vol 13, Iss 9, p e1006997 (2017)

Sheep are a key source of meat, milk and fibre for the global livestock sector, and an important biomedical model. Global analysis of gene expression across multiple tissues has aided genome annotation and supported functional annotation of mammalian

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::61614fa6a99d0efc5d59d0d79800c2af

High-performance web services for querying gene and variant annotation

Autor: Sean D. Mooney, Ginger Tsueng, Benjamin J. Ainscough, Cyrus Afrasiabi, Adam Mark, Moritz Juchler, Gregory S. Stupp, Andrew I. Su, Nikhil Gopal, Chunlei Wu, Christopher J. Mungall, Obi L. Griffith, Timothy E. Putman, Ali Torkamani, Patricia L. Whetzel, Jiwen Xin

Publikováno v: Genome biology, vol 17, iss 1
Xin, J; Mark, A; Afrasiabi, C; Tsueng, G; Juchler, M; Gopal, N; et al.(2016). High-performance web services for querying gene and variant annotation. Genome Biology, 17(1). doi: 10.1186/s13059-016-0953-9. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/65d60426
Genome Biology

Efficient tools for data management and integration are essential for many aspects of high-throughput biology. In particular, annotations of genes and human genetic variants are commonly used but highly fragmented across many resources. Here, we desc

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::50e990e2635dec1e06299e5c3f3a968a
https://escholarship.org/uc/item/65d60426