Zobrazeno 1 - 10
of 13
pro vyhledávání: '"Cyril, Matthey-Doret"'
Publikováno v:
Nature Communications, Vol 15, Iss 1, Pp 1-9 (2024)
Abstract Genome-wide chromatin conformation capture assays provide formidable insights into the spatial organization of genomes. However, due to the complexity of the data structure, their integration in multi-omics workflows remains challenging. We
Externí odkaz:
https://doaj.org/article/784cfdce3e7a42eebf731e94e75d445b
Autor:
Cyril Matthey-Doret, Lyam Baudry, Axel Breuer, Rémi Montagne, Nadège Guiglielmoni, Vittore Scolari, Etienne Jean, Arnaud Campeas, Philippe Henri Chanut, Edgar Oriol, Adrien Méot, Laurent Politis, Antoine Vigouroux, Pierrick Moreau, Romain Koszul, Axel Cournac
Publikováno v:
Nature Communications, Vol 11, Iss 1, Pp 1-11 (2020)
Chromatin loops bridging distant loci within chromosomes can be detected by a variety of techniques such as Hi-C. Here the authors present Chromosight, an algorithm applied on mammalian, bacterial, viral and yeast genomes, able to detect various type
Externí odkaz:
https://doaj.org/article/20c44158dd6e482ab8fe58b0cdcc8deb
Autor:
Jennifer Yihong Tan, Adam Alexander Thil Smith, Maria Ferreira da Silva, Cyril Matthey-Doret, Rico Rueedi, Reyhan Sönmez, David Ding, Zoltán Kutalik, Sven Bergmann, Ana Claudia Marques
Publikováno v:
Cell Reports, Vol 18, Iss 9, Pp 2280-2288 (2017)
Summary: Intergenic long noncoding RNAs (lincRNAs) are the largest class of transcripts in the human genome. Although many have recently been linked to complex human traits, the underlying mechanisms for most of these transcripts remain undetermined.
Externí odkaz:
https://doaj.org/article/5d01618d3be54ed7906fef4461536835
Autor:
Cyril Matthey-Doret, Morgan J. Colp, Pedro Escoll, Agnès Thierry, Pierrick Moreau, Bruce Curtis, Tobias Sahr, Matt Sarrasin, Michael W. Gray, B. Franz Lang, John M. Archibald, Carmen Buchrieser, Romain Koszul
Publikováno v:
Genome Research
Genome Research, 2022, 32 (9), pp.1698-1710. ⟨10.1101/gr.276375.121⟩
Genome Research, 2022, 32 (9), pp.1698-1710. ⟨10.1101/gr.276375.121⟩
The unicellular amoeba Acanthamoeba castellanii is ubiquitous in aquatic environments, where it preys on bacteria. The organism also hosts bacterial endosymbionts, some of which are parasitic, including human pathogens such as Chlamydia and Legionell
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1fd84e1335c51304c2246e05359eb63b
https://hal-pasteur.archives-ouvertes.fr/pasteur-03913195/document
https://hal-pasteur.archives-ouvertes.fr/pasteur-03913195/document
Autor:
Romain Koszul, Pierrick Moreau, Axel Cournac, Shogofa Mortaza, Lyam Baudry, Cyril Matthey-Doret
Publikováno v:
Hi-C Data Analysis : methods and protocols
Silvio Bicciato, Francesco Ferrari. Hi-C Data Analysis : methods and protocols, 2301, Springer US, pp.1-15, 2022, Methods in Molecular Biology, 978-1-0716-1390-0 (ebook). ⟨10.1007/978-1-0716-1390-0_1⟩
Methods in Molecular Biology ISBN: 9781071613894
Silvio Bicciato, Francesco Ferrari. Hi-C Data Analysis : methods and protocols, 2301, Springer US, pp.1-15, 2022, Methods in Molecular Biology, 978-1-0716-1390-0 (ebook). ⟨10.1007/978-1-0716-1390-0_1⟩
Methods in Molecular Biology ISBN: 9781071613894
International audience; Over the last decade, genomic proximity ligation approaches have reshaped our vision of chromosomes 3D organizations, from bacteria nucleoids to larger eukaryotic genomes. The different protocols (3Cseq, Hi-C, TCC, MicroC [XL]
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::40d1c8acd05a0d419692435cb07d5c7f
https://hal-pasteur.archives-ouvertes.fr/pasteur-03376844
https://hal-pasteur.archives-ouvertes.fr/pasteur-03376844
Autor:
Cyril, Matthey-Doret, Morgan J, Colp, Pedro, Escoll, Agnès, Thierry, Pierrick, Moreau, Bruce, Curtis, Tobias, Sahr, Matt, Sarrasin, Michael W, Gray, B Franz, Lang, John M, Archibald, Carmen, Buchrieser, Romain, Koszul
Publikováno v:
Genome research.
The unicellular amoeba
Autor:
Romain Koszul, Michael W. Gray, Cyril Matthey-Doret, John M. Archibald, Bruce A. Curtis, Morgan Colp, B. Franz Lang, Carmen Buchrieser, Matt Sarrasin, Agnès Thierry, Pedro Escoll
The unicellular amoeba Acanthamoeba castellanii is ubiquitous in aquatic environments, where it preys on bacteria. The organism also hosts bacterial endosymbionts, some of which are parasitic, including human pathogens such as Chlamydia and Legionell
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::0d965e041072c3be69ead834475b6f1b
https://doi.org/10.1101/2021.10.26.465878
https://doi.org/10.1101/2021.10.26.465878
Autor:
Cyril, Matthey-Doret, Lyam, Baudry, Shogofa, Mortaza, Pierrick, Moreau, Romain, Koszul, Axel, Cournac
Publikováno v:
Methods in molecular biology (Clifton, N.J.). 2301
Over the last decade, genomic proximity ligation approaches have reshaped our vision of chromosomes 3D organizations, from bacteria nucleoids to larger eukaryotic genomes. The different protocols (3Cseq, Hi-C, TCC, MicroC [XL], Hi-CO, etc.) rely on c
Autor:
Axel Breuer, Axel Cournac, Antoine Vigouroux, Etienne Jean, Adrien Meot, Edgar Oriol, Romain Koszul, Laurent Politis, Arnaud Campeas, Nadège Guiglielmoni, Cyril Matthey-Doret, Lyam Baudry, Vittore F. Scolari, Philippe Henri Chanut, Pierrick Moreau, Rémi Montagne
Publikováno v:
Nature Communications
Nature Communications, Nature Publishing Group, 2020, 11 (1), pp.5795. ⟨10.1038/s41467-020-19562-7⟩
Nature Communications, Vol 11, Iss 1, Pp 1-11 (2020)
Nature Communications, 2020, 11 (1), pp.5795. ⟨10.1038/s41467-020-19562-7⟩
Nature Communications, Nature Publishing Group, 2020, 11 (1), pp.5795. ⟨10.1038/s41467-020-19562-7⟩
Nature Communications, Vol 11, Iss 1, Pp 1-11 (2020)
Nature Communications, 2020, 11 (1), pp.5795. ⟨10.1038/s41467-020-19562-7⟩
Chromosomes of all species studied so far display a variety of higher-order organisational features, such as self-interacting domains or loops. These structures, which are often associated to biological functions, form distinct, visible patterns on g
Autor:
Sven Bergmann, Reyhan Sonmez, Cyril Matthey-Doret, Rico Rueedi, Adam Alexander T. Smith, Maria Ferreira da Silva, Ana C. Marques, David Ding, Zoltán Kutalik, Jennifer Y. Tan
Publikováno v:
Cell Reports, Vol 18, Iss 9, Pp 2280-2288 (2017)
Cell reports, vol. 18, no. 9, pp. 2280-2288
Cell reports, vol. 18, no. 9, pp. 2280-2288
Summary: Intergenic long noncoding RNAs (lincRNAs) are the largest class of transcripts in the human genome. Although many have recently been linked to complex human traits, the underlying mechanisms for most of these transcripts remain undetermined.