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The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update

Autor: Afgan, Enis, Nekrutenko, Anton, Grüning, Bjórn, Blankenberg, Daniel, Goecks, Jeremy, Schatz, Michael, Ostrovsky, Alexander, Mahmoud, Alexandru, Lonie, Andrew, Syme, Anna, Fouilloux, Anne, Bretaudeau, Anthony, Kumar, Anup, Eschenlauer, Arthur, Desanto, Assunta, Guerler, Aysam, Serrano-Solano, Beatriz, Batut, Bérénice, Grüning, Björn, Langhorst, Bradley, Carr, Bridget, Raubenolt, Bryan, Hyde, Cameron, Bromhead, Catherine, Barnett, Christopher, Royaux, Coline, Gallardo, Cristóbal, Fornika, Daniel, Baker, Dannon, Bouvier, Dave, Clements, Dave, de Lima Morais, David, Tabernero, David Lopez, Lariviere, Delphine, Nasr, Engy, Zambelli, Federico, Heyl, Florian, Psomopoulos, Fotis, Coppens, Frederik, Price, Gareth, Cuccuru, Gianmauro, Corguillé, Gildas Le, von Kuster, Greg, Akbulut, Gulsum Gudukbay, Rasche, Helena, Hotz, Hans-Rudolf, Eguinoa, Ignacio, Makunin, Igor, Ranawaka, Isuru, Taylor, James, Joshi, Jayadev, Hillman-Jackson, Jennifer, Chilton, John, Kamali, Kaivan, Suderman, Keith, Poterlowicz, Krzysztof, Yvan, Le Bras, Lopez-Delisle, Lucille, Sargent, Luke, Bassetti, Madeline, Tangaro, Marco Antonio, van den Beek, Marius, Čech, Martin, Bernt, Matthias, Fahrner, Matthias, Tekman, Mehmet, Föll, Melanie, Crusoe, Michael, Roncoroni, Miguel, Kucher, Natalie, Coraor, Nate, Stoler, Nicholas, Rhodes, Nick, Soranzo, Nicola, Pinter, Niko, Goonasekera, Nuwan, Moreno, Pablo, Videm, Pavankumar, Melanie, Petera, Mandreoli, Pietro, Jagtap, Pratik, Gu, Qiang, Weber, Ralf, Lazarus, Ross, Vorderman, Ruben, Hiltemann, Saskia, Golitsynskiy, Sergey, Garg, Shilpa, Bray, Simon, Gladman, Simon, Leo, Simone, Mehta, Subina, Griffin, Timothy, Jalili, Vahid, Yves, Vandenbrouck, Wen, Victor, Nagampalli, Vijay, Bacon, Wendi, de Koning, Willem, Maier, Wolfgang, Briggs, Peter

Publikováno v: Nucleic Acids Research
Nucleic Acids Research, 2022, 50 (W1), pp.W345-W351. ⟨10.1093/nar/gkac247⟩
Afgan, E, Nekrutenko, A, Grüning, B A, Blankenberg, D, Goecks, J, Schatz, M C, Ostrovsky, A E, Mahmoud, A, Lonie, A J, Syme, A, Fouilloux, A, Bretaudeau, A, Nekrutenko, A, Kumar, A, Eschenlauer, A C, Desanto, A D, Guerler, A, Serrano-Solano, B, Batut, B, Grüning, B A, Langhorst, B W, Carr, B, Raubenolt, B A, Hyde, C J, Bromhead, C J, Barnett, C B, Royaux, C, Gallardo, C, Blankenberg, D, Fornika, D J, Baker, D, Bouvier, D, Clements, D, De Lima Morais, D A, Tabernero, D L, Lariviere, D, Nasr, E, Afgan, E, Zambelli, F, Heyl, F, Psomopoulos, F, Coppens, F, Price, G R, Cuccuru, G, Corguillé, G L, Von Kuster, G, Akbulut, G G, Rasche, H, Hans-Rudolf, H, Eguinoa, I, Makunin, I, Ranawaka, I J, Taylor, J P, Joshi, J, Hillman-Jackson, J, Chilton, J M, Kamali, K, Suderman, K, Poterlowicz, K, Yvan, L B, Lopez-Delisle, L, Sargent, L, Bassetti, M E, Tangaro, M A, Van Den Beek, M, Cech, M, Bernt, M, Fahrner, M, Tekman, M, Föll, M C, Schatz, M C, Crusoe, M R, Roncoroni, M, Kucher, N, Coraor, N, Stoler, N, Rhodes, N, Soranzo, N, Pinter, N, Goonasekera, N A, Moreno, P A, Videm, P, Melanie, P, Mandreoli, P, Jagtap, P D, Gu, Q, Weber, R J M, Lazarus, R, Vorderman, R H P, Hiltemann, S, Golitsynskiy, S, Garg, S, Bray, S A, Gladman, S L, Leo, S, Mehta, S P, Griffin, T J, Jalili, V, Yves, V, Wen, V, Nagampalli, V K, Bacon, W A, De Koning, W, Maier, W & Briggs, P J 2022, ' The Galaxy platform for accessible, reproducible and collaborative biomedical analyses : 2022 update ', Nucleic Acids Research, vol. 50, no. W1, pp. W345-W351 . https://doi.org/10.1093/nar/gkac247
Nucleic Acids Research, 50(W1), W345-W351. Oxford University Press

Galaxy is a mature, browser accessible workbench for scientific computing. It enables scientists to share, analyze and visualize their own data, with minimal technical impediments. A thriving global community continues to use, maintain and contribute

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c391994be394041f6d06e629a94d035a
https://hal.science/hal-04142105

Expanding the Galaxy's reference data.

Autor: VijayKrishna, Nagampalli, Joshi, Jayadev, Coraor, Nate, Hillman-Jackson, Jennifer, Bouvier, Dave, van den Beek, Marius, Eguinoa, Ignacio, Coppens, Frederik, Davis, John, Stolarczyk, Michał, Sheffield, Nathan C, Gladman, Simon, Cuccuru, Gianmauro, Grüning, Björn, Soranzo, Nicola, Rasche, Helena, Langhorst, Bradley W, Bernt, Matthias, Fornika, Dan, Morais, David Anderson de Lima

Publikováno v: Bioinformatics Advances; 2022, Vol. 2 Issue 1, p1-4, 4p

PENELOPE: a complete Laboratory Information Management System for Next Generation Sequencing Laboratories

Autor: Atzeni, Rossano, Cuccuru, Gianmauro, Cusano, Roberto, Uva, Paolo, Fotia, Giorgio, Saran, Raj

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::7da3f1ea1a92091fa4881b58ad385825

Simulating Cardiac Electrophysiology Using Unstructured All-Hexahedra Spectral Elements.

Autor: Cuccuru, Gianmauro¹, Fotia, Giorgio¹, Maggio, Fabio¹ maggio@crs4.it, Southern, James²

Publikováno v: BioMed Research International. 10/25/2015, Vol. 2015, p1-15. 15p.