Developing reproducible bioinformatics analysis workflows for heterogeneous computing environments to support African genomics.

Autor: Baichoo S; Department of Digital Technologies, University of Mauritius, Reduit, Mauritius. shakunb@uom.ac.mu., Souilmi Y; Australian Centre for Ancient DNA, University of Adelaide, Adelaide, South Australia, Australia., Panji S; Computational Biology Division, Department of Integrative Medical Biosciences, IDM, University of Cape Town, Cape Town, South Africa., Botha G; Computational Biology Division, Department of Integrative Medical Biosciences, IDM, University of Cape Town, Cape Town, South Africa., Meintjes A; Computational Biology Division, Department of Integrative Medical Biosciences, IDM, University of Cape Town, Cape Town, South Africa., Hazelhurst S; School of Electrical & Information Engineering, University of the Witwatersrand, Johannesburg, South Africa.; Sydney Brenner Institute for Molecular Bioscience, University of the Witwatersrand, Johannesburg, South Africa., Bendou H; South African National Bioinformatics Institute, University of the Western Cape, Bellville, Cape Town, South Africa.; Natural Sciences, University of the Western Cape, Bellville, Cape Town, South Africa., Beste E; South African National Bioinformatics Institute, University of the Western Cape, Bellville, Cape Town, South Africa.; Natural Sciences, University of the Western Cape, Bellville, Cape Town, South Africa., Mpangase PT; Sydney Brenner Institute for Molecular Bioscience, University of the Witwatersrand, Johannesburg, South Africa., Souiai O; Institut Pasteur De Tunis, University Tunis El manar, Tunis, Tunisia.; Institut Superieur des Technologies Medicales de Tunis, University Tunis El manar, Tunis, Tunisia., Alghali M; Center for Bioinformatics & Systems Biology, Faculty of Science, University of Khartoum, Khartoum, Sudan.; Department of Electrical & Electronic Engineering, Faculty of Engineering, University of Khartoum, Khartoum, Sudan., Yi L; South African National Bioinformatics Institute, University of the Western Cape, Bellville, Cape Town, South Africa.; Natural Sciences, University of the Western Cape, Bellville, Cape Town, South Africa., O'Connor BD; Genomics Institute, University of California, Santa Cruz, California, USA., Crusoe M; Common Workflow Language project, Software Freedom Conservancy, New York City, NY, USA., Armstrong D; Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA., Aron S; Sydney Brenner Institute for Molecular Bioscience, University of the Witwatersrand, Johannesburg, South Africa., Joubert F; Centre for Bioinformatics and Computational Biology, Department of Biochemistry, Genetics and Microbiology, University of Pretoria, Pretoria, South Africa., Ahmed AE; Center for Bioinformatics & Systems Biology, Faculty of Science, University of Khartoum, Khartoum, Sudan.; Department of Electrical & Electronic Engineering, Faculty of Engineering, University of Khartoum, Khartoum, Sudan., Mbiyavanga M; Computational Biology Division, Department of Integrative Medical Biosciences, IDM, University of Cape Town, Cape Town, South Africa., Heusden PV; South African National Bioinformatics Institute, University of the Western Cape, Bellville, Cape Town, South Africa.; Natural Sciences, University of the Western Cape, Bellville, Cape Town, South Africa., Magosi LE; Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK.; Radcliffe Department of Medicine, University of Oxford, Oxford, UK., Zermeno J; National Center for Supercomputing Applications, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA., Mainzer LS; Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.; National Center for Supercomputing Applications, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA., Fadlelmola FM; Center for Bioinformatics & Systems Biology, Faculty of Science, University of Khartoum, Khartoum, Sudan., Jongeneel CV; Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA., Mulder N; Computational Biology Division, Department of Integrative Medical Biosciences, IDM, University of Cape Town, Cape Town, South Africa.

Publikováno v: BMC bioinformatics [BMC Bioinformatics] 2018 Nov 29; Vol. 19 (1), pp. 457. Date of Electronic Publication: 2018 Nov 29.

Using bio.tools to generate and annotate workbench tool descriptions.

Autor: Hillion KH; Bioinformatics and Biostatistics HUB, Centre de Bioinformatique, Biostatistique et Biologie Intégrative (C3BI, USR 3756 Institut Pasteur et CNRS), Paris, France., Kuzmin I; Institute of Computer Science, University of Tartu, Tartu, Estonia., Khodak A; Igor Sikorsky Kyiv Polytechnic Institute, National Technical University of Ukraine, Kyiv, Ukraine., Rasche E; Lehrstuhl für Bioinformatik, Institut für Informatik, Albert-Ludwigs-Universität Freiburg, Freiburg, Germany., Crusoe M; Common Workflow Language Project, Vilnius, Lithuania., Peterson H; Institute of Computer Science, University of Tartu, Tartu, Estonia., Ison J; DTU Bioinformatics, Technical University of Denmark, Copenhagen, Denmark., Ménager H; Bioinformatics and Biostatistics HUB, Centre de Bioinformatique, Biostatistique et Biologie Intégrative (C3BI, USR 3756 Institut Pasteur et CNRS), Paris, France.

Publikováno v: F1000Research [F1000Res] 2017 Nov 30; Vol. 6. Date of Electronic Publication: 2017 Nov 30 (Print Publication: 2017).

Machine Learning Techniques for Developing Remotely Monitored Central Nervous System Biomarkers Using Wearable Sensors: A Narrative Literature Review.

Autor: ZhuParris, Ahnjili^1,2,3 (AUTHOR) azhuparris@chdr.nl, de Goede, Annika A.¹ (AUTHOR), Yocarini, Iris E.² (AUTHOR), Kraaij, Wessel^2,4 (AUTHOR), Groeneveld, Geert Jan^1,2 (AUTHOR), Doll, Robert Jan¹ (AUTHOR) rjdoll@chdr.nl

Publikováno v: Sensors (14248220). Jun2023, Vol. 23 Issue 11, p5243. 35p.

Introduction of Avian metapneumovirus subtype A to the United States: molecular insights and implications.

Autor: Goraichuk, Iryna V., Torchetti, Mia K., Killian, Mary L., Kapczynski, Darrell R., Sary, Kathleen, Kulkarni, Arun, Suarez, David L.

Publikováno v: Frontiers in Microbiology; 2024, p1-14, 14p

Evaluating LC-HRMS metabolomics data processing software using FAIR principles for research software.

Autor: Du, Xinsong¹ (AUTHOR), Dastmalchi, Farhad¹ (AUTHOR), Ye, Hao² (AUTHOR), Garrett, Timothy J.³ (AUTHOR), Diller, Matthew A.¹ (AUTHOR), Liu, Mei¹ (AUTHOR), Hogan, William R.¹ (AUTHOR), Brochhausen, Mathias⁴ (AUTHOR), Lemas, Dominick J.^1,5,6 (AUTHOR) djlemas@ufl.edu

Publikováno v: Metabolomics. Feb2023, Vol. 19 Issue 2, p1-20. 20p.