The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars.

Autor: Salojärvi J; School of Biological Sciences, Nanyang Technological University, Singapore, Singapore. jarkko@ntu.edu.sg.; Organismal and Evolutionary Biology Research Programme, University of Helsinki, Helsinki, Finland. jarkko@ntu.edu.sg.; Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore, Singapore. jarkko@ntu.edu.sg., Rambani A; Boyce Thompson Institute, Cornell University, Ithaca, NY, USA., Yu Z; Department of Mathematics and Statistics, University of Ottawa, Ottawa, Ontario, Canada., Guyot R; Institut de Recherche pour le Développement (IRD), Université de Montpellier, Montpellier, France.; Department of Electronics and Automation, Universidad Autónoma de Manizales, Manizales, Colombia., Strickler S; Boyce Thompson Institute, Cornell University, Ithaca, NY, USA., Lepelley M; Société des Produits Nestlé SA, Nestlé Research, Tours, France., Wang C; Organismal and Evolutionary Biology Research Programme, University of Helsinki, Helsinki, Finland., Rajaraman S; Organismal and Evolutionary Biology Research Programme, University of Helsinki, Helsinki, Finland., Rastas P; Institute of Biotechnology, University of Helsinki, Helsinki, Finland., Zheng C; Department of Mathematics and Statistics, University of Ottawa, Ottawa, Ontario, Canada., Muñoz DS; Department of Mathematics and Statistics, University of Ottawa, Ottawa, Ontario, Canada., Meidanis J; Institute of Computing, University of Campinas, Campinas, Brazil., Paschoal AR; Department of Computer Science, The Federal University of Technology - Paraná (UTFPR), Cornélio Procópio, Brazil., Bawin Y; Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Melle, Belgium., Krabbenhoft TJ; Department of Biological Sciences, University at Buffalo, Buffalo, NY, USA., Wang ZQ; Department of Biological Sciences, University at Buffalo, Buffalo, NY, USA., Fleck SJ; Department of Biological Sciences, University at Buffalo, Buffalo, NY, USA., Aussel R; Société des Produits Nestlé SA, Nestlé Research, Tours, France.; Centre d'Immunologie de Marseille-Luminy, Aix Marseille Université, Marseille, France., Bellanger L; Société des Produits Nestlé SA, Nestlé Research, Tours, France., Charpagne A; Société des Produits Nestlé SA, Nestlé Research, Lausanne, Switzerland., Fournier C; Société des Produits Nestlé SA, Nestlé Research, Lausanne, Switzerland., Kassam M; Société des Produits Nestlé SA, Nestlé Research, Lausanne, Switzerland., Lefebvre G; Société des Produits Nestlé SA, Nestlé Research, Lausanne, Switzerland., Métairon S; Société des Produits Nestlé SA, Nestlé Research, Lausanne, Switzerland., Moine D; Société des Produits Nestlé SA, Nestlé Research, Lausanne, Switzerland., Rigoreau M; Société des Produits Nestlé SA, Nestlé Research, Tours, France., Stolte J; Société des Produits Nestlé SA, Nestlé Research, Lausanne, Switzerland., Hamon P; Institut de Recherche pour le Développement (IRD), Université de Montpellier, Montpellier, France., Couturon E; Institut de Recherche pour le Développement (IRD), Université de Montpellier, Montpellier, France., Tranchant-Dubreuil C; Institut de Recherche pour le Développement (IRD), Université de Montpellier, Montpellier, France., Mukherjee M; Department of Biological Sciences, University at Buffalo, Buffalo, NY, USA., Lan T; Department of Biological Sciences, University at Buffalo, Buffalo, NY, USA., Engelhardt J; Department of Computer Science, University of Leipzig, Leipzig, Germany., Stadler P; Department of Computer Science, University of Leipzig, Leipzig, Germany.; Interdisciplinary Center for Bioinformatics, University of Leipzig, Leipzig, Germany., Correia De Lemos SM; Group of Genomics and Transcriptomes in Plants, São Paulo State University, UNESP, Rio Claro, Brazil., Suzuki SI; Centro de Ciências Agrárias, Universidade Estadual de Londrina, Londrina, Brazil., Sumirat U; Indonesian Coffee and Cocoa Research Institute (ICCRI), Jember, Indonesia., Wai CM; University of Illinois at Urbana-Champaign, Urbana, IL, USA., Dauchot N; Research Unit in Plant Cellular and Molecular Biology, University of Namur, Namur, Belgium., Orozco-Arias S; Department of Electronics and Automation, Universidad Autónoma de Manizales, Manizales, Colombia., Garavito A; Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas y Naturales, Universidad de Caldas, Manizales, Colombia., Kiwuka C; National Agricultural Research Organization (NARO), Entebbe, Uganda., Musoli P; National Agricultural Research Organization (NARO), Entebbe, Uganda., Nalukenge A; National Agricultural Research Organization (NARO), Entebbe, Uganda., Guichoux E; Biodiversité Gènes & Communautés, INRA, Bordeaux, France., Reinout H; Hortus Botanicus Amsterdam, Amsterdam, the Netherlands., Smit M; Hortus Botanicus Amsterdam, Amsterdam, the Netherlands., Carretero-Paulet L; Departamento de Biología y Geología, Universidad de Almería, Almería, Spain., Filho OG; Instituto Agronômico (IAC) Centro de Café 'Alcides Carvalho', Fazenda Santa Elisa, Campinas, Brazil., Braghini MT; Instituto Agronômico (IAC) Centro de Café 'Alcides Carvalho', Fazenda Santa Elisa, Campinas, Brazil., Padilha L; Embrapa Café/Instituto Agronômico (IAC) Centro de Café 'Alcides Carvalho', Fazenda Santa Elisa, Campinas, Brazil., Sera GH; Instituto de Desenvolvimento Rural do Paraná- IAPAR, Londrina, Brazil., Ruttink T; Plant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Melle, Belgium.; Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium., Henry R; Queensland Alliance for Agriculture and Food Innovation, University of Queensland, Brisbane, Queensland, Australia., Marraccini P; CIRAD - UMR DIADE (IRD-CIRAD-Université de Montpellier) BP 64501, Montpellier, France., Van de Peer Y; Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.; Department of Biochemistry, Genetics and Microbiology, University of Pretoria, Pretoria, South Africa.; College of Horticulture, Academy for Advanced Interdisciplinary Studies, Nanjing Agricultural University, Nanjing, China.; Center for Plant Systems Biology, VIB, Ghent, Belgium., Andrade A; Embrapa Café/Inovacafé Laboratory of Molecular Genetics Campus da UFLA-MG, Lavras, Brazil., Domingues D; Group of Genomics and Transcriptomes in Plants, São Paulo State University, UNESP, Rio Claro, Brazil., Giuliano G; Italian National Agency for New Technologies, Energy and Sustainable Economic Development, ENEA Casaccia Research Center, Rome, Italy., Mueller L; Boyce Thompson Institute, Cornell University, Ithaca, NY, USA., Pereira LF; Embrapa Café/Lab. Biotecnologia, Área de Melhoramento Genético, Londrina, Brazil., Plaisance S; VIB Nucleomics Core, Leuven, Belgium., Poncet V; Institut de Recherche pour le Développement (IRD), Université de Montpellier, Montpellier, France., Rombauts S; Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.; Center for Plant Systems Biology, VIB, Ghent, Belgium., Sankoff D; Department of Mathematics and Statistics, University of Ottawa, Ottawa, Ontario, Canada., Albert VA; Department of Biological Sciences, University at Buffalo, Buffalo, NY, USA. vaalbert@buffalo.edu., Crouzillat D; Société des Produits Nestlé SA, Nestlé Research, Tours, France. dcrouzillat@gmail.com., de Kochko A; Institut de Recherche pour le Développement (IRD), Université de Montpellier, Montpellier, France. alexandre.dekochko@gmail.com., Descombes P; Société des Produits Nestlé SA, Nestlé Research, Lausanne, Switzerland. patrick.descombes@rd.nestle.com.

Publikováno v: Nature genetics [Nat Genet] 2024 Apr; Vol. 56 (4), pp. 721-731. Date of Electronic Publication: 2024 Apr 15.

Adaptive potential of Coffea canephora from Uganda in response to climate change.

Autor: de Aquino SO; DIADE, Univ Montpellier, CIRAD, IRD, Montpellier, France.; Federal University of Lavras, Lavras, Brazil., Kiwuka C; NARO, Kampala, Uganda.; Centre for Crop Systems Analysis, Wageningen University, Wageningen, Netherlands., Tournebize R; DIADE, Univ Montpellier, CIRAD, IRD, Montpellier, France., Gain C; U. Grenoble-Alpes, TIMC-IMAG, CNRS, UMR 5525, Grenoble, France.; LJK, Inria, Grenoble, France., Marraccini P; DIADE, Univ Montpellier, CIRAD, IRD, Montpellier, France., Mariac C; DIADE, Univ Montpellier, CIRAD, IRD, Montpellier, France., Bethune K; DIADE, Univ Montpellier, CIRAD, IRD, Montpellier, France., Couderc M; DIADE, Univ Montpellier, CIRAD, IRD, Montpellier, France., Cubry P; DIADE, Univ Montpellier, CIRAD, IRD, Montpellier, France., Andrade AC; EMBRAPA Coffee-INOVACAFE, Lavras, Brazil., Lepelley M; NESTLE Research, Tours, France., Darracq O; NESTLE Research, Tours, France., Crouzillat D; NESTLE Research, Tours, France., Anten N; Centre for Crop Systems Analysis, Wageningen University, Wageningen, Netherlands., Musoli P; NARO, Kampala, Uganda., Vigouroux Y; DIADE, Univ Montpellier, CIRAD, IRD, Montpellier, France., de Kochko A; DIADE, Univ Montpellier, CIRAD, IRD, Montpellier, France., Manel S; CEFE, Univ Montpellier, CNRS, EPHE-PSL University, IRD, Montpellier, France., François O; U. Grenoble-Alpes, TIMC-IMAG, CNRS, UMR 5525, Grenoble, France.; LJK, Inria, Grenoble, France., Poncet V; DIADE, Univ Montpellier, CIRAD, IRD, Montpellier, France.

Publikováno v: Molecular ecology [Mol Ecol] 2022 Mar; Vol. 31 (6), pp. 1800-1819. Date of Electronic Publication: 2022 Feb 01.

Potencial adaptativo de Coffea canephora para projeções das alterações climáticas

Autor: De Aquino, S.O., Tournebize, R., Marraccini, P., Mariac, Cédric, Couderc, Marie, Bethune, Kevin, Cubry, Philippe, Andrade, A.C., Darracq, O., Lepelley, M., Crouzillat, D., Kiwuka, C., Anten, N., Manel, S., François, O., Vigouroux, Yves, Kochko, Alexandre de, Poncet, Valérie

Publikováno v: X Simpósio de Pesquisa dos Cafés do Brasil

Simposio de Pesquisa dos Cafés do Brasil, Vitória, BRA, 08-/10/2019 - 10/10/2019; Testar se e como populações naturais são adaptadas ao seu ambiente local e prever suas respostas em função das alterações futuras do habitat é de importância

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::12c9016247fc003a361b535e4112057e
http://agritrop.cirad.fr/593839/

Development and evaluation of a genome-wide Coffee 8.5K SNP array and its application for high-density genetic mapping and for investigating the origin of Coffea arabica L

Autor: Merot-L'anthoene, V., Tournebize, R., Darracq, O., Rattina, V., Lepelley, M., Bellanger, L., Dubreuil Tranchant, Christine, Coulee, M., Pegard, M., Metairon, S., Fournier, C., Stoffelen, P., Janssens, S. B., Kiwuka, C., Musoli, P., Sumirat, U., Legnate, H., Kambale, J. L., Neto, J. F. D., Revel, C., Kochko, Alexandre de, Descombes, P., Crouzillat, D., Poncet, Valérie

Coffee species such as Coffea canephora P. (Robusta) and C. arabica L. (Arabica) are important cash crops in tropical regions around the world. C. arabica is an allotetraploid (2n = 4x = 44) originating from a hybridization event of the two diploid s

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od_______932::ed7b40cabde37b6ebe0524846d061fb0
http://www.documentation.ird.fr/hor/fdi:010076130

Biotechnology of plantation crops

Autor: Kochko, Alexandre de, Hamon, Serge, Guyot, Romain, Couturon, Emmanuel, Poncet, Valérie, Dubreuil Tranchant, Christine, Crouzillat, D., Rigoreau, M., Hamon, Perla

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od_______932::37e6f6ae8f55fc2bb009670ed09b7c08
http://www.documentation.ird.fr/hor/fdi:010069162