Community recommendations on cryoEM data archiving and validation

Autor: Kleywegt, Gerard J., Adams, Paul D., Butcher, Sarah J., Lawson, Cathy, Rohou, Alexis, Rosenthal, Peter B., Subramaniam, Sriram, Topf, Maya, Abbott, Sanja, Baldwin, Philip R., Berrisford, John M., Bricogne, Gérard, Choudhary, Preeti, Croll, Tristan I., Danev, Radostin, Ganesan, Sai J., Grant, Timothy, Gutmanas, Aleksandras, Henderson, Richard, Heymann, J. Bernard, Huiskonen, Juha T., Istrate, Andrei, Kato, Takayuki, Lander, Gabriel C., Lok, Shee-Mei, Ludtke, Steven J., Murshudov, Garib N., Pye, Ryan, Pintilie, Grigore D., Richardson, Jane S., Sachse, Carsten, Salih, Osman, Scheres, Sjors H. W., Schroeder, Gunnar F., Sorzano, Carlos Oscar S., Stagg, Scott M., Wang, Zhe, Warshamanage, Rangana, Westbrook, John D., Winn, Martyn D., Young, Jasmine Y., Burley, Stephen K., Hoch, Jeffrey C., Kurisu, Genji, Morris, Kyle, Patwardhan, Ardan, Velankar, Sameer

In January 2020, a workshop was held at EMBL-EBI (Hinxton, UK) to discuss data requirements for deposition and validation of cryoEM structures, with a focus on single-particle analysis. The meeting was attended by 45 experts in data processing, model

Externí odkaz: http://arxiv.org/abs/2311.17640

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Putting AlphaFold models to work with phenix.process_predicted_model and ISOLDE.

Autor: Oeffner, Robert D.¹ (AUTHOR), Croll, Tristan I.¹ (AUTHOR), Millán, Claudia¹ (AUTHOR), Poon, Billy K.² (AUTHOR), Schlicksup, Christopher J.² (AUTHOR), Read, Randy J.¹ (AUTHOR) rjr27@cam.ac.uk, Terwilliger, Tom C.³ (AUTHOR) tterwilliger@newmexicoconsortium.org

Publikováno v: Acta Crystallographica: Section D, Structural Biology. Nov2022, Vol. 78 Issue 11, p1303-1314. 12p.

Multiple functional self-association interfaces in plant TIR domains

Autor: Zhang, Xiaoxiao, Bernoux, Maud, Bentham, Adam R., Newman, Toby E., Ve, Thomas, Casey, Lachlan W., Raaymakers, Tom M., Hu, Jian, Croll, Tristan I., Schreiber, Karl J., Staskawicz, Brian J., Anderson, Peter A., Sohn, Kee Hoon, Williams, Simon J., Dodds, Peter N., Kobe, Bostjan

Publikováno v: Proceedings of the National Academy of Sciences of the United States of America, 2017 Mar 01. 114(10), E2046-E2052.

Externí odkaz: https://www.jstor.org/stable/26480137

A structural biology community assessment of AlphaFold2 applications

Autor: Akdel, Mehmet, Pires, Douglas EV, Pardo, Eduard Porta, Jänes, Jürgen, Zalevsky, Arthur O, Mészáros, Bálint, Bryant, Patrick, Good, Lydia L, Laskowski, Roman A, Pozzati, Gabriele, Shenoy, Aditi, Zhu, Wensi, Kundrotas, Petras, Serra, Victoria Ruiz, Rodrigues, Carlos HM, Dunham, Alistair S, Burke, David, Borkakoti, Neera, Velankar, Sameer, Frost, Adam, Basquin, Jérôme, Lindorff-Larsen, Kresten, Bateman, Alex, Kajava, Andrey V, Valencia, Alfonso, Ovchinnikov, Sergey, Durairaj, Janani, Ascher, David B, Thornton, Janet M, Davey, Norman E, Stein, Amelie, Elofsson, Arne, Croll, Tristan I, Beltrao, Pedro

Publikováno v: Nature Structural & Molecular Biology, 29 (11)
Akdel, M, Pires, D E, Porta Pardo, E, Jänes, J, Zalevsky, A O, Meszaros, B, Bryant, P, Good, L L, Laskowski, R A, Pozzati, G, Shenoy, A, Zhu, W, Kundrotas, P, Serra, V R, Rodrigues, C H M, Dunham, A S, Burke, D, Borkakoti, N, Velankar, S, Frost, A, Basquin, J, Lindorff-Larsen, K, Bateman, A, Kajava, A, Valencia, A, Ovchinnikov, S, Durairaj, J, Ascher, D B, Thornton, J M, Davey, N E, Stein, A, Elofsson, A, Croll, T & Beltrao, P 2022, ' A structural biology community assessment of AlphaFold2 applications ', Nature Structural & Molecular Biology, vol. 29, no. 11 . https://doi.org/10.1038/s41594-022-00849-w
Nature Structural and Molecular Biology 29 (2022) 11
Nature Structural and Molecular Biology, 29(11), 1056-1067

Most proteins fold into 3D structures that determine how they function and orchestrate the biological processes of the cell. Recent developments in computational methods for protein structure predictions have reached the accuracy of experimentally de

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::56b5120d87bb9bff7ff683ea7fd4c584