Zobrazeno 1 - 10
of 12
pro vyhledávání: '"Cristian Del Fabbro"'
Publikováno v:
PLoS ONE, Vol 8, Iss 12, p e85024 (2013)
Next Generation Sequencing is having an extremely strong impact in biological and medical research and diagnostics, with applications ranging from gene expression quantification to genotyping and genome reconstruction. Sequencing data is often provid
Externí odkaz:
https://doaj.org/article/43e0dc820ed44c82ba28223aac613d29
Autor:
Emanuele De Paoli, Michele Morgante, Paola Zuccolotto, Giovanni Battista Tornielli, Gabriele Di Gaspero, Cristian Del Fabbro, D. Grossi, Gabriele Magris, Silvia Dal Santo, Gabriella De Lorenzis, Marianna Fasoli, Mario Pezzotti, Marco Sandri, Sara Zenoni, Lucio Brancadoro
Changes in the performance of genotypes in different environments are defined as genotype × environment (G×E) interactions. In grapevine (Vitis vinifera), complex interactions between different genotypes and climate, soil and farming practices yiel
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::98957c5a204121bffefc0da6142bfc1f
http://hdl.handle.net/11562/973907
http://hdl.handle.net/11562/973907
Publikováno v:
BIBM
Many software tools are currently available to solve the hard goal of assembling millions of fragments produced in sequencing projects. Such a variety includes packages for long and short reads, generated by classical and next-generation sequencing t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::69e660184742117ab441a77d25dc1575
https://hdl.handle.net/11368/2952
https://hdl.handle.net/11368/2952
Autor:
William G. Farmerie, Chunxian Chen, Marcos A. Machado, Daniel Ramón, Jarrod Chapman, Patrick Wincker, Dominique Brunel, Jerry Jenkins, Juan V. Munoz-Sanz, Mohammed Mohiuddin, Javier Terol, Victoria Ibanez, Simone Scalabrin, Giuseppe Reforgiato, Amparo Herrero-Ortega, Cristian Del Fabbro, Xavier Perrier, Jeremy Schmutz, Simon E. Prochnik, Jérôme Salse, Kamel Jabbari, Uffe Hellsten, Julie Poulain, Daniel S. Rokhsar, Alexandre Lomsadze, Karin M. Fredrikson, Andrea Zuccolo, Francisco R. Tadeo, Leandro H. Estornell, Luis Navarro, Olivier Jaillon, Brian Desany, Frederick G. Gmitter, François Luro, Federica Cattonaro, G Albert Wu, Paul Burns, Francis Quetier, Marco Aurélio Takita, Mark Borodovsky, Manuel Talon, Tim Harkins, Julián Pérez-Pérez, Jane Grimwood, Pablo Aleza, Florent Murat, Mikeal L. Roose, Patrick Ollitrault, Michele Morgante, Karine Labadie, Arnaud Couloux, Sara Pinosio, Juliana Freitas-Astúa, Manuel Ruiz, Chinnappa D. Kodira
Publikováno v:
Nature Biotechnology
Nature Biotechnology, Nature Publishing Group, 2014, 32 (7), pp.656-662. ⟨10.1038/nbt.2906⟩
Nature biotechnology, vol 32, iss 7
Nature Biotechnology, 2014, 32 (7), pp.656-662. ⟨10.1038/nbt.2906⟩
Impreso
ReDivia. Repositorio Digital del Instituto Valenciano de Investigaciones Agrarias
instname
Nature biotechnology
Nature Biotechnology 7 (32), 656-663. (2014)
Nature Biotechnology, Nature Publishing Group, 2014, 32 (7), pp.656-662. ⟨10.1038/nbt.2906⟩
Nature biotechnology, vol 32, iss 7
Nature Biotechnology, 2014, 32 (7), pp.656-662. ⟨10.1038/nbt.2906⟩
Impreso
ReDivia. Repositorio Digital del Instituto Valenciano de Investigaciones Agrarias
instname
Nature biotechnology
Nature Biotechnology 7 (32), 656-663. (2014)
Cultivated citrus are selections from, or hybrids of, wild progenitor species whose identities and contributions to citrus domestication remain controversial. Here we sequence and compare citrus genomes-a high-quality reference haploid clementine gen
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ae204ae36c8ccb326263dfa47cf83532
https://hal.archives-ouvertes.fr/hal-02285484
https://hal.archives-ouvertes.fr/hal-02285484
Publikováno v:
PDP
We propose a parallel algorithm that solves the best k-mismatches alignment problem against a genomic reference using the "one sequence/multiple processes" paradigm and distributed memory. Our proposal is designed to take advantage of a computing clu
Autor:
Dent Earl, Jacob O. Kitzman, Iain MacCallum, James R. Knight, Jacques Corbeil, Elenie Godzaridis, Cristian Del Fabbro, Paul J. Kersey, Martin Hunt, Octávio S. Paulo, Joseph Fass, Isaac Ho, Michael C. Schatz, Erich D. Jarvis, Dominique Lavenier, Simone Scalabrin, Thomas D. Otto, Nicolas Maillet, Siu-Ming Yiu, Timothy I. Shaw, David B. Jaffe, Henry Song, Ruibang Luo, Steve Goldstein, David Haussler, Francisco Pina-Martins, Richard A. Gibbs, Adam M. Phillippy, Michael Bechner, Ganeshkumar Ganapathy, Stephen Richards, Riccardo Vicedomini, Shuangye Yin, François Laviolette, Yingrui Li, T. Roderick Docking, Binghang Liu, Carson Qu, Wen-Chi Chou, Hao Zhang, Nuno A. Fonseca, Dariusz Przybylski, Bruno Vieira, Yue Liu, Matthew D. MacManes, Sébastien Boisvert, Yujian Shi, Jared T. Simpson, Sergey Kazakov, Sergey Koren, Jarrod Chapman, Giles Hall, Paul Baranay, Sante Gnerre, Shiguo Zhou, Rayan Chikhi, Filipe J. Ribeiro, Jason T. Howard, Zhenyu Li, Pavel Fedotov, Jay Shendure, J. Graham Ruby, Joseph B. Hiatt, Benedict Paten, Ian F Korf, David C. Schwartz, Keith Bradnam, Jianying Yuan, Alexey Sergushichev, Jun Wang, Hamidreza Chitsaz, Daniel S. Rokhsar, Inanc Birol, Huaiyang Jiang, Kim C. Worley, Anton Alexandrov, Zemin Ning, Delphine Naquin, Michael Place, Matthias Haimel, Guojie Zhang, Guillaume Chapuis, Fedor Tsarev, Scott J. Emrich, Shaun D. Jackman, Sergey Melnikov, Xiang Qin, Ted Sharpe, Francesco Vezzi, Tak-Wah Lam, Richard Durbin
Publikováno v:
GigaScience
GigaScience, 2013, 2 (1), pp.10. ⟨10.1186/2047-217X-2-10⟩
Bradnam, Keith R; Fass, Joseph N; Alexandrov, Anton; Baranay, Paul; Bechner, Michael; Birol, Inanç; et al.(2013). Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species. GigaScience, 2(1), 10. doi: http://dx.doi.org/10.1186/2047-217X-2-10. Retrieved from: http://www.escholarship.org/uc/item/96r138rs
GigaScience, BioMed Central, 2013, 2 (1), pp.10. ⟨10.1186/2047-217X-2-10⟩
Europe PubMed Central
GigaScience, 2013, 2 (1), pp.10. ⟨10.1186/2047-217X-2-10⟩
Bradnam, Keith R; Fass, Joseph N; Alexandrov, Anton; Baranay, Paul; Bechner, Michael; Birol, Inanç; et al.(2013). Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species. GigaScience, 2(1), 10. doi: http://dx.doi.org/10.1186/2047-217X-2-10. Retrieved from: http://www.escholarship.org/uc/item/96r138rs
GigaScience, BioMed Central, 2013, 2 (1), pp.10. ⟨10.1186/2047-217X-2-10⟩
Europe PubMed Central
Background - The process of generating raw genome sequence data continues to become cheaper, faster, and more accurate. However, assembly of such data into high-quality, finished genome sequences remains challenging. Many genome assembly tools are av
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bed770012eb3500d7b66d11edfc97ba9
http://hdl.handle.net/11390/990146
http://hdl.handle.net/11390/990146
Motivation: Coexpression networks are data-derived representations of genes behaving in a similar way across tissues and experimental conditions. They have been used for hypothesis generation and guilt-by-association approaches for inferring function
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::473de53fe78e69d05b2475faa6f9ebcf
http://hdl.handle.net/11390/990155
http://hdl.handle.net/11390/990155
Publikováno v:
BCB
Cytosine methylation is a DNA modification that has great impact on the regulation of gene expression and important implications for the biology and health of several living beings, including humans. Bisulfite conversion followed by next generation s
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d131c8f682e3445b489e9f4d30120422
http://hdl.handle.net/10278/3729831
http://hdl.handle.net/10278/3729831
Autor:
Graziano Pesole, Benjamin Noel, François Artiguenave, Alberto Policriti, Federica Cattonaro, Alessandro Vezzi, Delphine Jublot, Valérie Laucou, Michel Gouyvenoux, Eléonore Durand, Didier Merdinoglu, Cristian Del Fabbro, Giorgio Valle, Isabelle Le Clainche, Michael Alaux, Irena Juman, Erica Mica, Béatrice Segurens, Alberto Casagrande, Claude Scarpelli, Massimo Delledonne, Gabriele Di Gaspero, Jean-Marc Aury, David S. Horner, Marco Moroldo, M. Enrico Pè, Philippe Hugueney, Mario Pezzotti, Michel Caboche, Anne-Françoise Adam-Blondon, Véronique Anthouard, Nicola Vitulo, Alain Lecharny, Alain Billault, Virginie Vico, Olivier Jaillon, Christian Clepet, Sébastien Aubourg, Michele Morgante, Jean Weissenbach, Patrick Wincker, Nathalie Choisne, Aurélie Canaguier, Corinne Dasilva, Edgardo Ugarte, Philippe Chatelet, Clémence Bruyère, Vincent Dumas, Sophie Paillard, Fabrice Legeai, Nicoletta Felice, Simone Scalabrin, G Malacrida, Julie Poulain, Francis Quetier, Claire Jubin
Publikováno v:
Nature
Nature, 2007, 449 (7161), pp.463-7. ⟨10.1038/nature06148⟩
Nature, Nature Publishing Group, 2007, 449 (7161), pp.463-7. ⟨10.1038/nature06148⟩
Nature 7161 (449), 463-467. (2007)
Nature (Lond.) 449 (2007): 463–467.
info:cnr-pdr/source/autori:Jaillon O; Aury JM; Noel B; Policriti A; Clepet C; Casagrande A; Choisne N; Aubourg S; Vitulo N; Jubin C; Vezzi A; Legeai F; Hugueney P; Dasilva C; Horner D; Mica E; Jublot D; Poulain J; Bruyère C; Billault A; Segurens B; Gouyvenoux M; Ugarte E; Cattonaro F; Anthouard V; Vico V; Del Fabbro C; Alaux M; Di Gaspero G; Dumas V; Felice N; Paillard S; Juman I; Moroldo M; Scalabrin S; Canaguier A; Le Clainche I; Malacrida G; Durand E; Pesole G; Laucou V; Chatelet P; Merdinoglu D; Delledonne M; Pezzotti M; Lecharny A; Scarpelli C; Artiguenave F; Pè ME; Valle G; Morgante M; Caboche M; Adam-Blondon AF; Weissenbach J; Quétier F; Wincker P;/titolo:The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla/doi:/rivista:Nature (Lond.)/anno:2007/pagina_da:463/pagina_a:467/intervallo_pagine:463–467/volume:449
Nature, 2007, 449 (7161), pp.463-7. ⟨10.1038/nature06148⟩
Nature, Nature Publishing Group, 2007, 449 (7161), pp.463-7. ⟨10.1038/nature06148⟩
Nature 7161 (449), 463-467. (2007)
Nature (Lond.) 449 (2007): 463–467.
info:cnr-pdr/source/autori:Jaillon O; Aury JM; Noel B; Policriti A; Clepet C; Casagrande A; Choisne N; Aubourg S; Vitulo N; Jubin C; Vezzi A; Legeai F; Hugueney P; Dasilva C; Horner D; Mica E; Jublot D; Poulain J; Bruyère C; Billault A; Segurens B; Gouyvenoux M; Ugarte E; Cattonaro F; Anthouard V; Vico V; Del Fabbro C; Alaux M; Di Gaspero G; Dumas V; Felice N; Paillard S; Juman I; Moroldo M; Scalabrin S; Canaguier A; Le Clainche I; Malacrida G; Durand E; Pesole G; Laucou V; Chatelet P; Merdinoglu D; Delledonne M; Pezzotti M; Lecharny A; Scarpelli C; Artiguenave F; Pè ME; Valle G; Morgante M; Caboche M; Adam-Blondon AF; Weissenbach J; Quétier F; Wincker P;/titolo:The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla/doi:/rivista:Nature (Lond.)/anno:2007/pagina_da:463/pagina_a:467/intervallo_pagine:463–467/volume:449
International audience; The analysis of the first plant genomes provided unexpected evidence for genome duplication events in species that had previously been considered as true diploids on the basis of their genetics. These polyploidization events m
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0da9cf28d557dc0d3e64d2680bfde32a
http://hdl.handle.net/11382/302893
http://hdl.handle.net/11382/302893
Publikováno v:
Bioinformatics. 28:123-124
Summary: The advent of high-throughput sequencers (HTS) introduced the need of new tools in order to analyse the large amount of data that those machines are able to produce. The mandatory first step for a wide range of analyses is the alignment of t