Modeling and integration of N-glycan biomarkers in a comprehensive biomarker data model.

Autor: Lyman DF; The Department of Biochemistry and Molecular Medicine, Ross Hall, School of Medicine & Health Sciences, The George Washington University, 2300 Eye Street N.W., Washington, DC 20037, USA., Bell A; The Department of Biochemistry and Molecular Medicine, Ross Hall, School of Medicine & Health Sciences, The George Washington University, 2300 Eye Street N.W., Washington, DC 20037, USA., Black A; The McCormick Genomic and Proteomic Center, The Department of Biochemistry and Molecular Medicine, Ross Hall, School of Medicine & Health Sciences, The George Washington University, 2300 Eye Street N.W., Washington, DC 20037, USA., Dingerdissen H; The Department of Biochemistry and Molecular Medicine, Ross Hall, School of Medicine & Health Sciences, The George Washington University, 2300 Eye Street N.W., Washington, DC 20037, USA., Cauley E; The Department of Biochemistry and Molecular Medicine, Ross Hall, School of Medicine & Health Sciences, The George Washington University, 2300 Eye Street N.W., Washington, DC 20037, USA.; The Department of Cell & Molecular Pharmacology, Basic Science Building 358, 173 Ashley Avenue, The Medical University of South Carolina, Charleston, SC 29425, USA., Gogate N; The Department of Biochemistry and Molecular Medicine, Ross Hall, School of Medicine & Health Sciences, The George Washington University, 2300 Eye Street N.W., Washington, DC 20037, USA., Liu D; NASA Jet Propulsion Laboratory, 4800 Oak Grove Dr., Pasadena, California 91109, USA., Joseph A; The Department of Biochemistry and Molecular Medicine, Ross Hall, School of Medicine & Health Sciences, The George Washington University, 2300 Eye Street N.W., Washington, DC 20037, USA., Kahsay R; The Department of Biochemistry and Molecular Medicine, Ross Hall, School of Medicine & Health Sciences, The George Washington University, 2300 Eye Street N.W., Washington, DC 20037, USA., Crichton DJ; NASA Jet Propulsion Laboratory, 4800 Oak Grove Dr., Pasadena, California 91109, USA., Mehta A; The Department of Cell & Molecular Pharmacology, Basic Science Building 358, 173 Ashley Avenue, The Medical University of South Carolina, Charleston, SC 29425, USA., Mazumder R; The Department of Biochemistry and Molecular Medicine, Ross Hall, School of Medicine & Health Sciences, The George Washington University, 2300 Eye Street N.W., Washington, DC 20037, USA.; The Department of Cell & Molecular Pharmacology, Basic Science Building 358, 173 Ashley Avenue, The Medical University of South Carolina, Charleston, SC 29425, USA.

Publikováno v: Glycobiology [Glycobiology] 2022 Sep 19; Vol. 32 (10), pp. 855-870.

Machine learning analyses of highly-multiplexed immunofluorescence identifies distinct tumor and stromal cell populations in primary pancreatic tumors.

Autor: Vance K; Eppley Institute for Research in Cancer and Allied Diseases, Fred and Pamela Buffett Cancer Center, University of Nebraska Medical Center, Omaha, NE, USA., Alitinok A; Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, USA., Winfree S; Eppley Institute for Research in Cancer and Allied Diseases, Fred and Pamela Buffett Cancer Center, University of Nebraska Medical Center, Omaha, NE, USA.; Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE, USA., Jensen-Smith H; Eppley Institute for Research in Cancer and Allied Diseases, Fred and Pamela Buffett Cancer Center, University of Nebraska Medical Center, Omaha, NE, USA., Swanson BJ; Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE, USA., Grandgenett PM; Eppley Institute for Research in Cancer and Allied Diseases, Fred and Pamela Buffett Cancer Center, University of Nebraska Medical Center, Omaha, NE, USA., Klute KA; Department of Internal Medicine, University of Nebraska Medical Center, Omaha, NE, USA., Crichton DJ; Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, USA., Hollingsworth MA; Eppley Institute for Research in Cancer and Allied Diseases, Fred and Pamela Buffett Cancer Center, University of Nebraska Medical Center, Omaha, NE, USA.

Publikováno v: Cancer biomarkers : section A of Disease markers [Cancer Biomark] 2022; Vol. 33 (2), pp. 219-235.

Cancer Biomarkers and Big Data: A Planetary Science Approach.

Autor: Crichton DJ; Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA 91109, USA., Altinok A; Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA 91109, USA., Amos CI; Institute for Clinical and Translational Research, Baylor College of Medicine, Houston, TX 77030, USA., Anton K; University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA., Cinquini L; Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA 91109, USA., Colbert M; University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA., Feng Z; Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA., Goel A; City of Hope, Duarte, CA 91010, USA., Kelly S; Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA 91109, USA., Kincaid H; Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA 91109, USA., Liu D; Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA 91109, USA., Lombeyda S; California Institute of Technology, Pasadena, CA 91125, USA., Mahabal A; California Institute of Technology, Pasadena, CA 91125, USA., Mishra A; Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA 91109, USA., Patriotis C; National Cancer Institute, Rockville, MD 20850, USA., Srivastava S; National Cancer Institute, Rockville, MD 20850, USA. Electronic address: srivasts@mail.nih.gov.

Publikováno v: Cancer cell [Cancer Cell] 2020 Dec 14; Vol. 38 (6), pp. 757-760. Date of Electronic Publication: 2020 Sep 24.

Summarizing performance for genome scale measurement of miRNA: reference samples and metrics.

Autor: Pine PS; Joint Initiative for Metrology in Biology, National Institute of Standards and Technology, 443 Via Ortega, Stanford, CA, 94305, USA. p.scott.pine@nist.gov., Lund SP; Statistical Engineering Division, National Institute of Standards and Technology, Gaithersburg, MD, USA., Parsons JR; Joint Initiative for Metrology in Biology, National Institute of Standards and Technology, 443 Via Ortega, Stanford, CA, 94305, USA., Vang LK; Joint Initiative for Metrology in Biology, National Institute of Standards and Technology, 443 Via Ortega, Stanford, CA, 94305, USA., Mahabal AA; Center for Data Driven Discovery, California Institute of Technology, Pasadena, CA, USA., Cinquini L; Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, USA., Kelly SC; Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, USA., Kincaid H; Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, USA., Crichton DJ; Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, USA., Spira A; Section of Computational Biomedicine, Department of Medicine, Boston University School of Medicine, Boston, MA, USA., Liu G; Section of Computational Biomedicine, Department of Medicine, Boston University School of Medicine, Boston, MA, USA., Gower AC; Section of Computational Biomedicine, Department of Medicine, Boston University School of Medicine, Boston, MA, USA., Pass HI; Department of Cardiothoracic Surgery, NYU Langone Medical Center, New York, NY, USA., Goparaju C; Department of Cardiothoracic Surgery, NYU Langone Medical Center, New York, NY, USA., Dubinett SM; Department of Medicine, David Geffen School of Medicine at UCLA, Los Angeles, CA, USA.; Veterans Affairs Greater Los Angeles Healthcare System, Los Angeles, CA, USA., Krysan K; Department of Medicine, David Geffen School of Medicine at UCLA, Los Angeles, CA, USA., Stass SA; Department of Pathology, University of Maryland School of Medicine, Baltimore, MD, USA., Kukuruga D; Department of Pathology, University of Maryland School of Medicine, Baltimore, MD, USA., Van Keuren-Jensen K; Translational Genomics Research Institute, Phoenix, AZ, USA., Courtright-Lim A; Translational Genomics Research Institute, Phoenix, AZ, USA., Thompson KL; Center for Drug Evaluation and Research, Food and Drug Administration, Silver Spring, MD, USA., Rosenzweig BA; Center for Drug Evaluation and Research, Food and Drug Administration, Silver Spring, MD, USA., Sorbara L; Division of Cancer Prevention, National Cancer Institute, Rockville, MD, USA., Srivastava S; Division of Cancer Prevention, National Cancer Institute, Rockville, MD, USA., Salit ML; Joint Initiative for Metrology in Biology, National Institute of Standards and Technology, 443 Via Ortega, Stanford, CA, 94305, USA.

Publikováno v: BMC genomics [BMC Genomics] 2018 Mar 06; Vol. 19 (1), pp. 180. Date of Electronic Publication: 2018 Mar 06.

Generating a focused view of disease ontology cancer terms for pan-cancer data integration and analysis.

Autor: Wu TJ; Department of Biochemistry and Molecular Medicine, George Washington University, Washington, DC 20037, USA, Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA, Center for Bioinformatics and Information Technology, National Cancer Institute, 9609 Medical Center Drive, Rockville, MD 20892-9760, USA, NASA Jet Propulsion Laboratory, Pasadena, CA, USA, Division of Cancer Prevention, National Cancer Institute, 9609 Medical Center Drive, Rockville, MD 20892-9760, USA, Wellcome Trust Sanger Institute, Cambridge, UK and McCormick Genomic and Proteomic Center, George Washington University, Washington, DC 20037, USA., Schriml LM; Department of Biochemistry and Molecular Medicine, George Washington University, Washington, DC 20037, USA, Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA, Center for Bioinformatics and Information Technology, National Cancer Institute, 9609 Medical Center Drive, Rockville, MD 20892-9760, USA, NASA Jet Propulsion Laboratory, Pasadena, CA, USA, Division of Cancer Prevention, National Cancer Institute, 9609 Medical Center Drive, Rockville, MD 20892-9760, USA, Wellcome Trust Sanger Institute, Cambridge, UK and McCormick Genomic and Proteomic Center, George Washington University, Washington, DC 20037, USA., Chen QR; Department of Biochemistry and Molecular Medicine, George Washington University, Washington, DC 20037, USA, Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA, Center for Bioinformatics and Information Technology, National Cancer Institute, 9609 Medical Center Drive, Rockville, MD 20892-9760, USA, NASA Jet Propulsion Laboratory, Pasadena, CA, USA, Division of Cancer Prevention, National Cancer Institute, 9609 Medical Center Drive, Rockville, MD 20892-9760, USA, Wellcome Trust Sanger Institute, Cambridge, UK and McCormick Genomic and Proteomic Center, George Washington University, Washington, DC 20037, USA., Colbert M; Department of Biochemistry and Molecular Medicine, George Washington University, Washington, DC 20037, USA, Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA, Center for Bioinformatics and Information Technology, National Cancer Institute, 9609 Medical Center Drive, Rockville, MD 20892-9760, USA, NASA Jet Propulsion Laboratory, Pasadena, CA, USA, Division of Cancer Prevention, National Cancer Institute, 9609 Medical Center Drive, Rockville, MD 20892-9760, USA, Wellcome Trust Sanger Institute, Cambridge, UK and McCormick Genomic and Proteomic Center, George Washington University, Washington, DC 20037, USA., Crichton DJ; Department of Biochemistry and Molecular Medicine, George Washington University, Washington, DC 20037, USA, Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA, Center for Bioinformatics and Information Technology, National Cancer Institute, 9609 Medical Center Drive, Rockville, MD 20892-9760, USA, NASA Jet Propulsion Laboratory, Pasadena, CA, USA, Division of Cancer Prevention, National Cancer Institute, 9609 Medical Center Drive, Rockville, MD 20892-9760, USA, Wellcome Trust Sanger Institute, Cambridge, UK and McCormick Genomic and Proteomic Center, George Washington University, Washington, DC 20037, USA., Finney R; Department of Biochemistry and Molecular Medicine, George Washington University, Washington, DC 20037, USA, Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA, Center for Bioinformatics and Information Technology, National Cancer Institute, 9609 Medical Center Drive, Rockville, MD 20892-9760, USA, NASA Jet Propulsion Laboratory, Pasadena, CA, USA, Division of Cancer Prevention, National Cancer Institute, 9609 Medical Center Drive, Rockville, MD 20892-9760, USA, Wellcome Trust Sanger Institute, Cambridge, UK and McCormick Genomic and Proteomic Center, George Washington University, Washington, DC 20037, USA., Hu Y; Department of Biochemistry and Molecular Medicine, George Washington University, Washington, DC 20037, USA, Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA, Center for Bioinformatics and Information Technology, National Cancer Institute, 9609 Medical Center Drive, Rockville, MD 20892-9760, USA, NASA Jet Propulsion Laboratory, Pasadena, CA, USA, Division of Cancer Prevention, National Cancer Institute, 9609 Medical Center Drive, Rockville, MD 20892-9760, USA, Wellcome Trust Sanger Institute, Cambridge, UK and McCormick Genomic and Proteomic Center, George Washington University, Washington, DC 20037, USA., Kibbe WA; Department of Biochemistry and Molecular Medicine, George Washington University, Washington, DC 20037, USA, Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA, Center for Bioinformatics and Information Technology, National Cancer Institute, 9609 Medical Center Drive, Rockville, MD 20892-9760, USA, NASA Jet Propulsion Laboratory, Pasadena, CA, USA, Division of Cancer Prevention, National Cancer Institute, 9609 Medical Center Drive, Rockville, MD 20892-9760, USA, Wellcome Trust Sanger Institute, Cambridge, UK and McCormick Genomic and Proteomic Center, George Washington University, Washington, DC 20037, USA., Kincaid H; Department of Biochemistry and Molecular Medicine, George Washington University, Washington, DC 20037, USA, Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA, Center for Bioinformatics and Information Technology, National Cancer Institute, 9609 Medical Center Drive, Rockville, MD 20892-9760, USA, NASA Jet Propulsion Laboratory, Pasadena, CA, USA, Division of Cancer Prevention, National Cancer Institute, 9609 Medical Center Drive, Rockville, MD 20892-9760, USA, Wellcome Trust Sanger Institute, Cambridge, UK and McCormick Genomic and Proteomic Center, George Washington University, Washington, DC 20037, USA., Meerzaman D; Department of Biochemistry and Molecular Medicine, George Washington University, Washington, DC 20037, USA, Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA, Center for Bioinformatics and Information Technology, National Cancer Institute, 9609 Medical Center Drive, Rockville, MD 20892-9760, USA, NASA Jet Propulsion Laboratory, Pasadena, CA, USA, Division of Cancer Prevention, National Cancer Institute, 9609 Medical Center Drive, Rockville, MD 20892-9760, USA, Wellcome Trust Sanger Institute, Cambridge, UK and McCormick Genomic and Proteomic Center, George Washington University, Washington, DC 20037, USA., Mitraka E; Department of Biochemistry and Molecular Medicine, George Washington University, Washington, DC 20037, USA, Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA, Center for Bioinformatics and Information Technology, National Cancer Institute, 9609 Medical Center Drive, Rockville, MD 20892-9760, USA, NASA Jet Propulsion Laboratory, Pasadena, CA, USA, Division of Cancer Prevention, National Cancer Institute, 9609 Medical Center Drive, Rockville, MD 20892-9760, USA, Wellcome Trust Sanger Institute, Cambridge, UK and McCormick Genomic and Proteomic Center, George Washington University, Washington, DC 20037, USA., Pan Y; Department of Biochemistry and Molecular Medicine, George Washington University, Washington, DC 20037, USA, Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA, Center for Bioinformatics and Information Technology, National Cancer Institute, 9609 Medical Center Drive, Rockville, MD 20892-9760, USA, NASA Jet Propulsion Laboratory, Pasadena, CA, USA, Division of Cancer Prevention, National Cancer Institute, 9609 Medical Center Drive, Rockville, MD 20892-9760, USA, Wellcome Trust Sanger Institute, Cambridge, UK and McCormick Genomic and Proteomic Center, George Washington University, Washington, DC 20037, USA., Smith KM; Department of Biochemistry and Molecular Medicine, George Washington University, Washington, DC 20037, USA, Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA, Center for Bioinformatics and Information Technology, National Cancer Institute, 9609 Medical Center Drive, Rockville, MD 20892-9760, USA, NASA Jet Propulsion Laboratory, Pasadena, CA, USA, Division of Cancer Prevention, National Cancer Institute, 9609 Medical Center Drive, Rockville, MD 20892-9760, USA, Wellcome Trust Sanger Institute, Cambridge, UK and McCormick Genomic and Proteomic Center, George Washington University, Washington, DC 20037, USA., Srivastava S; Department of Biochemistry and Molecular Medicine, George Washington University, Washington, DC 20037, USA, Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA, Center for Bioinformatics and Information Technology, National Cancer Institute, 9609 Medical Center Drive, Rockville, MD 20892-9760, USA, NASA Jet Propulsion Laboratory, Pasadena, CA, USA, Division of Cancer Prevention, National Cancer Institute, 9609 Medical Center Drive, Rockville, MD 20892-9760, USA, Wellcome Trust Sanger Institute, Cambridge, UK and McCormick Genomic and Proteomic Center, George Washington University, Washington, DC 20037, USA., Ward S; Department of Biochemistry and Molecular Medicine, George Washington University, Washington, DC 20037, USA, Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA, Center for Bioinformatics and Information Technology, National Cancer Institute, 9609 Medical Center Drive, Rockville, MD 20892-9760, USA, NASA Jet Propulsion Laboratory, Pasadena, CA, USA, Division of Cancer Prevention, National Cancer Institute, 9609 Medical Center Drive, Rockville, MD 20892-9760, USA, Wellcome Trust Sanger Institute, Cambridge, UK and McCormick Genomic and Proteomic Center, George Washington University, Washington, DC 20037, USA., Yan C; Department of Biochemistry and Molecular Medicine, George Washington University, Washington, DC 20037, USA, Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA, Center for Bioinformatics and Information Technology, National Cancer Institute, 9609 Medical Center Drive, Rockville, MD 20892-9760, USA, NASA Jet Propulsion Laboratory, Pasadena, CA, USA, Division of Cancer Prevention, National Cancer Institute, 9609 Medical Center Drive, Rockville, MD 20892-9760, USA, Wellcome Trust Sanger Institute, Cambridge, UK and McCormick Genomic and Proteomic Center, George Washington University, Washington, DC 20037, USA., Mazumder R; Department of Biochemistry and Molecular Medicine, George Washington University, Washington, DC 20037, USA, Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA, Center for Bioinformatics and Information Technology, National Cancer Institute, 9609 Medical Center Drive, Rockville, MD 20892-9760, USA, NASA Jet Propulsion Laboratory, Pasadena, CA, USA, Division of Cancer Prevention, National Cancer Institute, 9609 Medical Center Drive, Rockville, MD 20892-9760, USA, Wellcome Trust Sanger Institute, Cambridge, UK and McCormick Genomic and Proteomic Center, George Washington University, Washington, DC 20037, USA Department of Biochemistry and Molecular Medicine, George Washington University, Washington, DC 20037, USA, Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA, Center for Bioinformatics and Information Technology, National Cancer Institute, 9609 Medical Center Drive, Rockville, MD 20892-9760, USA, NASA Jet Propulsion Laboratory, Pasadena, CA, USA, Division of Cancer Prevention, National Cancer Institute, 9609 Medical Center Drive, Rockville, MD 20892-9760, USA, Wellcome Trust Sanger Institute, Cambridge, UK and McCormick Genomic and Proteomic Center, George Washington University, Washington, DC 20037, USA mazumder@gwu.edu.

Publikováno v: Database : the journal of biological databases and curation [Database (Oxford)] 2015 Apr 04; Vol. 2015, pp. bav032. Date of Electronic Publication: 2015 Apr 04 (Print Publication: 2015).