Efficient subtraction of insect rRNA prior to transcriptome analysis of Wolbachia-Drosophila lateral gene transfer

Autor: Kumar Nikhil, Creasy Todd, Sun Yezhou, Flowers Melissa, Tallon Luke J, Dunning Hotopp Julie C

Publikováno v: BMC Research Notes, Vol 5, Iss 1, p 230 (2012)

Abstract Background Numerous methods exist for enriching bacterial or mammalian mRNA prior to transcriptome experiments. Yet there persists a need for methods to enrich for mRNA in non-mammalian animal systems. For example, insects contain many impor

Externí odkaz: https://doaj.org/article/3a735434980d4ff298517ded36bf570b

Key Parameters of Tumor Epitope Immunogenicity Revealed Through a Consortium Approach Improve Neoantigen Prediction

Autor: Khan, Aly A., Lugade, Amit, Lazic, Ana M. Mijalkovic, Frentzen, Angela A. Elizabeth, Tadmor, Arbel D., Sasson, Ariella S., Rao, Arjun A., Pei, Baikang, Schrörs, Barbara, Berent-Maoz, Beata, Carreno, Beatriz M., Song, Bin, Peters, Bjoern, Li, Bo, Higgs, Brandon W., Stevenson, Brian J., Iseli, Christian, Miller, Christopher A., Morehouse, Christopher A., Melief, Cornelis J.M., Puig-Saus, Cristina, van Beek, Daphne, Balli, David, Gfeller, David, Haussler, David, Jäger, Dirk, Cortes, Eduardo, Esaulova, Ekaterina, Sherafat, Elham, Arcila, Francisco, Bartha, Gabor, Liu, Geng, Coukos, George, Richard, Guilhem, Chang, Han, Si, Han, Zörnig, Inka, Xenarios, Ioannis, Mandoiu, Ion, Kooi, Irsan, Conway, James P., Kessler, Jan H., Greenbaum, Jason A., Perera, Jason F., Harris, Jason, Hundal, Jasreet, Shelton, Jennifer M., Wang, Jianmin, Wang, Jiaqian, Greshock, Joel, Blake, Jonathon, Szustakowski, Joseph, Kodysh, Julia, Forman, Juliet, Wei, Lei, Lee, Leo J., Fanchi, Lorenzo F., Slagter, Maarten, Lang, Maren, Mueller, Markus, Lower, Martin, Vormehr, Mathias, Artyomov, Maxim N., Kuziora, Michael, Princiotta, Michael, Bassani-Sternberg, Michal, Macabali, Mignonette, Kojicic, Milica R., Yang, Naibo, Raicevic, Nevena M. Ilic, Guex, Nicolas, Robine, Nicolas, Halama, Niels, Skundric, Nikola M., Milicevic, Ognjen S., Gellert, Pascal, Jongeneel, Patrick, Charoentong, Pornpimol, Srivastava, Pramod K., Tanden, Prateek, Shah, Priyanka, Hu, Qiang, Gupta, Ravi, Chen, Richard, Petit, Robert, Ziman, Robert, Hilker, Rolf, Shukla, Sachet A., Al Seesi, Sahar, Boyle, Sean M., Qiu, Si, Sarkizova, Siranush, Salama, Sofie, Liu, Song, Wu, Song, Sridhar, Sriram, Ketelaars, Steven L.C., Jhunjhunwala, Suchit, Shcheglova, Tatiana, Schuepbach, Thierry, Creasy, Todd H., Josipovic, Veliborka, Kovacevic, Vladimir B., Fu, Weixuan, Krebber, Willem-Jan, Hsu, Yi-Hsiang, Sebastian, Yinong, Yalcin, Zeynep Kosaloglu, Huang, Zhiqin, Wells, Daniel K., van Buuren, Marit M., Dang, Kristen K., Hubbard-Lucey, Vanessa M., Sheehan, Kathleen C.F., Campbell, Katie M., Lamb, Andrew, Ward, Jeffrey P., Sidney, John, Blazquez, Ana B., Rech, Andrew J., Zaretsky, Jesse M., Comin-Anduix, Begonya, Ng, Alphonsus H.C., Chour, William, Yu, Thomas V., Rizvi, Hira, Chen, Jia M., Manning, Patrice, Steiner, Gabriela M., Doan, Xengie C., Merghoub, Taha, Guinney, Justin, Kolom, Adam, Selinsky, Cheryl, Ribas, Antoni, Hellmann, Matthew D., Hacohen, Nir, Sette, Alessandro, Heath, James R., Bhardwaj, Nina, Ramsdell, Fred, Schreiber, Robert D., Schumacher, Ton N., Kvistborg, Pia, Defranoux, Nadine A.

Publikováno v: In Cell 29 October 2020 183(3):818-834

Genome Sequence of Theileria parva, a Bovine Pathogen That Transforms Lymphocytes

Autor: Gardner, Malcolm J., Bishop, Richard, Shah, Trushar, de Villiers, Etienne P., Carlton, Jane M., Hall, Neil, Ren, Qinghu, Paulsen, Ian T., Pain, Arnab, Berriman, Matthew, Sato, Shigeharu, Ralph, Stuart A., Mann, David J., Xiong, Zikai, Shallom, Shamira J., Weidman, Janice, Jiang, Lingxia, Lynn, Jeffery, Weaver, Bruce, Shoaibi, Azadeh, Domingo, Alexander R., Wasawo, Delia, Crabtree, Jonathan, Wortman, Jennifer R., Haas, Brian, Angiuoli, Samuel V., Creasy, Todd H., Lu, Charles, Suh, Bernard, Silva, Joana C., Utterback, Teresa R., Feldblyum, Tamara V., Pertea, Mihaela, Allen, Jonathan, Nierman, William C., Salzberg, Steven L., White, Owen R., Fitzhugh, Henry A., Morzaria, Subhash, Venter, J. Craig, Fraser, Claire M., Nene, Vishvanath

Publikováno v: Science, 2005 Jul 01. 309(5731), 134-137.

Externí odkaz: https://www.jstor.org/stable/3842184

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Draft Genome of the Filarial Nematode Parasite Brugia malayi

Autor: Ghedin, Elodie, Wang, Shiliang, Spiro, David, Caler, Elisabet, Zhao, Qi, Crabtree, Jonathan, Allen, Jonathan E., Delcher, Arthur L., Guiliano, David B., Miranda-Saavedra, Diego, Angiuoli, Samuel V., Creasy, Todd, Amedeo, Paolo, Haas, Brian, El-Sayed, Najib M., Wortman, Jennifer R., Feldblyum, Tamara, Tallon, Luke, Schatz, Michael, Shumway, Martin, Koo, Hean, Salzberg, Steven L., Schobel, Seth, Pertea, Mihaela, Pop, Mihai, White, Owen, Barton, Geoffrey J., Carlow, Clotilde K. S., Crawford, Michael J., Daub, Jennifer, Dimmic, Matthew W., Estes, Chris F., Foster, Jeremy M., Ganatra, Mehul, Gregory, William F., Johnson, Nicholas M., Jin, Jinming, Komuniecki, Richard, Korf, Ian, Kumar, Sanjay, Laney, Sandra, Li, Ben-Wen, Li, Wen, Lindblom, Tim H., Lustigman, Sara, Ma, Dong, Maina, Claude V., Martin, David M. A., McCarter, James P., McReynolds, Larry, Mitreva, Makedonka, Nutman, Thomas B., Parkinson, John, Peregrín-Alvarez, José M., Poole, Catherine, Ren, Qinghu, Saunders, Lori, Sluder, Ann E., Smith, Katherine, Stanke, Mario, Unnasch, Thomas R., Ware, Jenna, Wei, Aguan D., Weil, Gary, Williams, Deryck J., Zhang, Yinhua, Williams, Steven A., Fraser-Liggett, Claire, Slatko, Barton, Blaxter, Mark L., Scott, Alan L.

Publikováno v: Science, 2007 Sep . 317(5845), 1756-1760.

Externí odkaz: https://www.jstor.org/stable/20048433