Zobrazeno 1 - 10
of 80
pro vyhledávání: '"Craig G Simpson"'
Autor:
Ewa Sybilska, Anna Collin, Bahareh Sadat Haddadi, Luis A. J. Mur, Manfred Beckmann, Wenbin Guo, Craig G. Simpson, Agata Daszkowska-Golec
Publikováno v:
Scientific Reports, Vol 14, Iss 1, Pp 1-17 (2024)
Abstract To decipher the molecular bases governing seed germination, this study presents the pivotal role of the cap-binding complex (CBC), comprising CBP20 and CBP80, in modulating the inhibitory effects of abscisic acid (ABA) in barley. Using both
Externí odkaz:
https://doaj.org/article/6042e5f1526745ad86accceaf8e1e727
Publikováno v:
PLoS ONE, Vol 11, Iss 12, p e0168028 (2016)
Alternative splicing (AS) is a regulated mechanism that generates multiple transcripts from individual genes. It is widespread in eukaryotic genomes and provides an effective way to control gene expression. At low temperatures, AS regulates Arabidops
Externí odkaz:
https://doaj.org/article/28fb9b15d0d74bc29700517e4761f89d
Autor:
Kalimullah Saighani, Megumi Kashiwagi, Safiullah Habibi, Craig G. Simpson, Tetsuya Yamada, Motoki Kanekatsu
Publikováno v:
Plants, Vol 13, Iss 13, p 1869 (2024)
Seed longevity is a crucial trait for the seed industry and genetic resource preservation. To develop excellent cultivars with extended seed lifespans, it is important to understand the mechanism of keeping seed germinability long term and to find us
Externí odkaz:
https://doaj.org/article/20f6390544604c92914d74b3b9463d97
Autor:
Linda Milne, Micha Bayer, Paulo Rapazote-Flores, Claus-Dieter Mayer, Robbie Waugh, Craig G. Simpson
Publikováno v:
Scientific Data, Vol 8, Iss 1, Pp 1-10 (2021)
Measurement(s) gene expression Technology Type(s) transcription profiling assay Factor Type(s) Genotype • Abiotic Stress • Developmental stage • Tissue • Biotic stress Sample Characteristic - Organism Hordeum vulgare Sample Characteristic - E
Externí odkaz:
https://doaj.org/article/3ad3f4f1435343e8a4a6e606de95aacf
Autor:
Paulo Rapazote-Flores, Micha Bayer, Linda Milne, Claus-Dieter Mayer, John Fuller, Wenbin Guo, Pete E. Hedley, Jenny Morris, Claire Halpin, Jason Kam, Sarah M. McKim, Monika Zwirek, M. Cristina Casao, Abdellah Barakate, Miriam Schreiber, Gordon Stephen, Runxuan Zhang, John W. S. Brown, Robbie Waugh, Craig G. Simpson
Publikováno v:
BMC Genomics, Vol 20, Iss 1, Pp 1-17 (2019)
Abstract Background The time required to analyse RNA-seq data varies considerably, due to discrete steps for computational assembly, quantification of gene expression and splicing analysis. Recent fast non-alignment tools such as Kallisto and Salmon
Externí odkaz:
https://doaj.org/article/ea771d6691a842949eb2a3af288e655c
Publikováno v:
Frontiers in Plant Science, Vol 11 (2020)
Externí odkaz:
https://doaj.org/article/a304b37c79b34238b54bbc87b77bd236
Autor:
Allison Haaning, Nicola McCallum, Robbie Waugh, John L. Fuller, Ronja Wonneberger, Max Coulter, Nils Stein, Wenbin Guo, Micha Bayer, Runxuan Zhang, Miriam Schreiber, Gary J. Muehlbauer, John W. S. Brown, Linda Milne, Juan Carlos Entizne, Craig G. Simpson
Accurate characterization of splice junctions as well as transcription start and end sites in reference transcriptomes allows precise quantification of transcripts from RNA-seq data and enable detailed investigations of transcriptional and post-trans
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::ee1692cda51c53de5627e3a4ed8925f5
https://doi.org/10.1101/2021.09.10.459729
https://doi.org/10.1101/2021.09.10.459729
Autor:
Micha Bayer, Sarah M. McKim, Wenbin Guo, John L. Fuller, Craig G. Simpson, Paulo Rapazote-Flores, Claus-Dieter Mayer, Pete E. Hedley, Miriam Schreiber, Jason Kam, Monika Zwirek, M. Cristina Casao, Claire Halpin, Jenny Morris, Gordon Stephen, Abdellah Barakate, Robbie Waugh, Runxuan Zhang, John W. S. Brown, Linda Milne
Publikováno v:
BMC Genomics, Vol 20, Iss 1, Pp 1-17 (2019)
BMC Genomics
BMC Genomics
Background The time required to analyse RNA-seq data varies considerably, due to discrete steps for computational assembly, quantification of gene expression and splicing analysis. Recent fast non-alignment tools such as Kallisto and Salmon overcome
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::20118471db605fa8674dcb9f1a65c445
https://doaj.org/article/ea771d6691a842949eb2a3af288e655c
https://doaj.org/article/ea771d6691a842949eb2a3af288e655c
Autor:
Robbie Waugh, Linda Milne, Paulo Rapazote-Flores, Micha Bayer, Craig G. Simpson, Claus-Dieter Mayer
Publikováno v:
Scientific Data
Scientific Data, Vol 8, Iss 1, Pp 1-10 (2021)
Scientific Data, Vol 8, Iss 1, Pp 1-10 (2021)
A high-quality, barley gene reference transcript dataset (BaRTv1.0), was used to quantify gene and transcript abundances from 22 RNA-seq experiments, covering 843 separate samples. Using the abundance data we developed a Barley Expression Database (E
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0ec515b774be3b4c736a73c94f0258d0
https://pubmed.ncbi.nlm.nih.gov/33767193
https://pubmed.ncbi.nlm.nih.gov/33767193
Autor:
Ramanjulu Sunkar, Amal Harb, Ganesan Govindan, Wenbin Guo, Vijaya Gopal Kakani, Craig G. Simpson
Publikováno v:
Frontiers in Plant Science
Frontiers in Plant Science, Vol 11 (2020)
Frontiers in Plant Science, Vol 11 (2020)
Like many cereal crops, barley is also negatively affected by drought stress. However, due to its simple genome as well as enhanced stress resilient nature compared to rice and wheat, barley has been considered as a model to decipher drought toleranc
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::02a5e536267216f395e196b556566186
http://europepmc.org/articles/PMC7786106
http://europepmc.org/articles/PMC7786106