Comparative genomics and divergence time estimation of the anaerobic fungi in herbivorous mammals

Autor: Wang, Y, Youssef, N, Couger, MB, Hanafy, R, Elshahed, M, Stajich, J

Publikováno v: Wang, Y; Youssef, N; Couger, MB; Hanafy, R; Elshahed, M; & Stajich, J. (2018). Comparative genomics and divergence time estimation of the anaerobic fungi in herbivorous mammals. UC Riverside: Retrieved from: http://www.escholarship.org/uc/item/5wq031r7

The anaerobic gut fungi (AGF) or Neocallimastigomycota inhabit the rumen of herbivorous mammals where they support plant fiber degradation. These obligate anaerobes have large and AT-biased genomes, which have limited genome-wide studies and the phyl

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od_______325::b98b192a89bfffc10f30396b533720d2
http://www.escholarship.org/uc/item/5wq031r7

Genomic Assessment of the Contribution of the Wolbachia Endosymbiont of Eurosta solidaginis to Gall Induction.

Autor: Fiutek N; Department of Biology, San Francisco State University, San Francisco, CA 94112, USA., Couger MB; Department of Thoracic Surgery, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115, USA., Pirro S; Iridian Genomes Inc., Bethesda, MD 20817, USA., Roy SW; Department of Biology, San Francisco State University, San Francisco, CA 94112, USA., de la Torre JR; Department of Biology, San Francisco State University, San Francisco, CA 94112, USA., Connor EF; Department of Biology, San Francisco State University, San Francisco, CA 94112, USA.

Publikováno v: International journal of molecular sciences [Int J Mol Sci] 2023 Jun 01; Vol. 24 (11). Date of Electronic Publication: 2023 Jun 01.

Sex chromosome transformation and the origin of a male-specific X chromosome in the creeping vole.

Autor: Couger MB; Department of Thoracic Surgery, Brigham and Women's Hospital, Boston MA, 02115, USA., Roy SW; Department of Biology, San Francisco State University, San Francisco, CA 94117, USA.; Department of Molecular and Cell Biology, University of California, Merced, Merced, CA 95343, USA., Anderson N; Department of Molecular and Cell Biology, University of California, Merced, Merced, CA 95343, USA., Gozashti L; Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology, Harvard University, Cambridge, MA 02138, USA., Pirro S; Iridian Genomes, Inc., Bethesda, MD 20817, USA., Millward LS; Department of Fisheries and Wildlife, Oregon State University, Corvallis, OR 97330, USA., Kim M; Circulomics Inc., Baltimore, MD 21202, USA., Kilburn D; Circulomics Inc., Baltimore, MD 21202, USA., Liu KJ; Circulomics Inc., Baltimore, MD 21202, USA., Wilson TM; US Forest Service, PNW Research Station, Corvallis, OR 97331, USA., Epps CW; Department of Fisheries and Wildlife, Oregon State University, Corvallis, OR 97330, USA., Dizney L; Department of Biology, University of Portland, Portland, OR 97203, USA., Ruedas LA; Department of Biology and Museum of Natural History, Portland State University, Portland, OR 97207, USA., Campbell P; Department of Evolution, Ecology, and Organismal Biology, University of California, Riverside, Riverside, CA 92521, USA. polly.campbell@ucr.edu.

Publikováno v: Science (New York, N.Y.) [Science] 2021 May 07; Vol. 372 (6542), pp. 592-600.

Genome Sequence of Lignin-Degrading Arthrobacter sp. Strain RT-1, Isolated from Termite Gut and Rumen Fluid.

Autor: Couger MB; Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, Oklahoma, USA., Graham C; Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, Oklahoma, USA., Fathepure BZ; Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, Oklahoma, USA babu.fathepure@okstate.edu.

Publikováno v: Microbiology resource announcements [Microbiol Resour Announc] 2020 Jan 16; Vol. 9 (3). Date of Electronic Publication: 2020 Jan 16.

Horizontal Gene Transfer as an Indispensable Driver for Evolution of Neocallimastigomycota into a Distinct Gut-Dwelling Fungal Lineage.

Autor: Murphy CL; Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, Oklahoma, USA., Youssef NH; Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, Oklahoma, USA., Hanafy RA; Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, Oklahoma, USA., Couger MB; High Performance Computing Center, Oklahoma State University, Stillwater, Oklahoma, USA., Stajich JE; Department of Microbiology and Plant Pathology, Institute for Integrative Genome Biology, University of California-Riverside, Riverside, California, USA., Wang Y; Department of Microbiology and Plant Pathology, Institute for Integrative Genome Biology, University of California-Riverside, Riverside, California, USA., Baker K; Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, Oklahoma, USA., Dagar SS; Bioenergy Group, Agharkar Research Institute, Pune, India., Griffith GW; Institute of Biological, Environmental, and Rural Sciences (IBERS), Aberystwyth University, Aberystwyth, Wales, United Kingdom., Farag IF; Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, Oklahoma, USA., Callaghan TM; Department for Quality Assurance and Analytics, Bavarian State Research Center for Agriculture, Freising, Germany., Elshahed MS; Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, Oklahoma, USA Mostafa@okstate.edu.

Publikováno v: Applied and environmental microbiology [Appl Environ Microbiol] 2019 Jul 18; Vol. 85 (15). Date of Electronic Publication: 2019 Jul 18 (Print Publication: 2019).